LXL04_000426 | RubberDandelionOmics

Gene overview

LXL04_000426

Reference: OH-1004 Chr: Chr01 Coordinates: 8026651-8029384 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1572 bp · LXL04_000426|LXL04_000426|OH1004|cDNA

ATGAACTTGTGCCTAGCCGATTTGGTTTGTGTGTCTGTCTTGTTCGGGAGAGACCCGGGTTCGATTCCTGGGAGTTTCATTTTTTGGTCATCCATTATAGAGACGTCGACGTGTTTCCTCTCTCCTATCTTCAAATCCGAAATCATCTACAAGCTTTCACTCAGCCCTCGGGCCATCAATATCTTGACCAAAAGGTTAATTATCCTGTTCTTCACATCGTCGAAGTTTGAAATCGTTTCACGTTTGCAGAAATCTACGGA...

CDS

Download CDS FASTA

1572 bp · LXL04_000426|LXL04_000426|OH1004|CDS

ATGAACTTGTGCCTAGCCGATTTGGTTTGTGTGTCTGTCTTGTTCGGGAGAGACCCGGGTTCGATTCCTGGGAGTTTCATTTTTTGGTCATCCATTATAGAGACGTCGACGTGTTTCCTCTCTCCTATCTTCAAATCCGAAATCATCTACAAGCTTTCACTCAGCCCTCGGGCCATCAATATCTTGACCAAAAGGTTAATTATCCTGTTCTTCACATCGTCGAAGTTTGAAATCGTTTCACGTTTGCAGAAATCTACGGA...

Protein

Download Protein FASTA

523 aa · LXL04_000426|LXL04_000426|OH1004|PROTEIN

MNLCLADLVCVSVLFGRDPGSIPGSFIFWSSIIETSTCFLSPIFKSEIIYKLSLSPRAINILTKRLIILFFTSSKFEIVSRLQKSTELGLLVLATESLISLPNYEVHNKPFLKCTYTIDQSLFYRVLTKMTPVGPFVKAARPDDGSSKKLNETQSKHQGCPMSNKETLNKQQGCPMSKENQSKQQGCPMSKVNQESKDSNVIPAKCPFGYDSQTFKIGPFSCIICQALLFESTRCVPCTHVFCKACISRFNDCPLCGADI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000426`
TK1151 ID	TkA01G612730
OH-1004 ID	LXL04_000426
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	86.200
Protein coverage (%)	TK1151 100.000 / OH-1004 93.881 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000426

Location Chr01:8026651-8029384 (-)

Description Similar to NCA1: Protein NCA1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54360`	Has holdase chaperone activity that may fold catalase to a functional structure.	Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.2013 · DOI: 10.1105/tpc.113.117192 A chaperone function of NO CATALASE ACTIVITY1 is required to maintain catalase activity and for multiple stress responses in Arabidopsis.2015 · DOI: 10.1105/tpc.114.135095

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000426 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0043069 negative regulation of programmed cell death Biological Process

GO:0044818 mitotic G2/M transition checkpoint Biological Process

GO:0045814 negative regulation of gene expression, epigenetic Biological Process

GO:0051301 cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0031519 PcG protein complex Cellular Component

GO:0035102 PRC1 complex Cellular Component

KEGG gene cross-reference

ath:AT3G54360

dre:394249

xla:734287

xtr:395009

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.469

Rank 1 · LXL04_000426 · OH-1004

Nucleus0.262

Rank 2 · LXL04_000426 · OH-1004

Mitochondrion0.150

Rank 3 · LXL04_000426 · OH-1004

Endoplasmic reticulum0.091

Rank 4 · LXL04_000426 · OH-1004

Cell membrane0.088

Rank 5 · LXL04_000426 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13920.13zf-C3HC4_3221-262 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000426	`PF13920.13`	zf-C3HC4_3	221	262	4.4e-06	27.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2V1`	Arabidopsis thaliana	Protein NCA1	63.119%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card