A pathway-centered entry for MVA/MEP, IPP/DMAPP, prenyl donors, CPT/CPTL, REF/SRPP, latex/root-associated and terpenoid candidate genes.
The current database contains 5523 candidate records, 4979 candidate genes, and 8 pathway steps; the main display is centered on the TK1151 reference while OH-1004/LXL04 remains queryable and linked.
8 reference genes are counted separately from rubber-dandelion candidates. They are literature, omics, or sequence resources from Para rubber tree, guayule, a related dandelion, and Eucommia; external function or homology is not direct validation in rubber dandelion.
| Species and material | Reference gene / sequence ID | Pathway step | Evidence and boundary | Source |
|---|---|---|---|---|
| Laticiferous dandelionTaraxacum brevicorniculatumcis-1,4-polyisopreneRNAi laticifers with polymer and particle assays | TbCPT1JQ991925.1CPT | CPT/CPTL branchLaticifer-specific cis-prenyltransferase | A_direct_experiment TbCPT1 is a direct laticifer-specific cis-rubber experimental reference in a related dandelion. External evidence in T. brevicorniculatum, not direct validation in T. kok-saghyz. | 10.1104/pp.111.187880Laticifer-specific cis-prenyltransferase silencing affects natural rubber biosynthesis in Taraxacum brevicorniculatum |
| Laticiferous dandelionTaraxacum brevicorniculatumcis-1,4-polyisopreneRNAi laticifers with polymer and particle assays | TbCPT2JQ991926.1CPT | CPT/CPTL branchLaticifer-specific cis-prenyltransferase | A_direct_experiment TbCPT2 is a direct laticifer-specific cis-rubber experimental reference in a related dandelion. External evidence in T. brevicorniculatum, not direct validation in T. kok-saghyz. | 10.1104/pp.111.187880Laticifer-specific cis-prenyltransferase silencing affects natural rubber biosynthesis in Taraxacum brevicorniculatum |
| Laticiferous dandelionTaraxacum brevicorniculatumcis-1,4-polyisopreneRNAi laticifers with polymer and particle assays | TbCPT3JQ991927.1CPT | CPT/CPTL branchLaticifer-specific cis-prenyltransferase | A_direct_experiment TbCPT3 is a direct laticifer-specific cis-rubber experimental reference in a related dandelion. External evidence in T. brevicorniculatum, not direct validation in T. kok-saghyz. | 10.1104/pp.111.187880Laticifer-specific cis-prenyltransferase silencing affects natural rubber biosynthesis in Taraxacum brevicorniculatum |
| Laticiferous dandelionTaraxacum brevicorniculatumcis-1,4-polyisopreneRubber-particle extraction and heterologous assays | TbSRPP1JQ991928.1SRPP | REF/SRPP rubber-particle proteinsSmall rubber-particle protein | A_direct_experiment TbSRPP1 is a direct experimental reference associated with rubber-particle formation. External particle-protein evidence, not direct validation in T. kok-saghyz. | 10.1111/tpj.13829Small rubber particle proteins from Taraxacum brevicorniculatum are associated with rubber particle formation |
| Laticiferous dandelionTaraxacum brevicorniculatumcis-1,4-polyisoprenePublic cDNA records | TbRTAKP763637.1RTA | Latex/root associatedRubber transferase activator reference | B_sequence_resource Sequence records support exact ID lookup and future homology mapping but do not independently establish function. Sequence record alone is not functional proof. | KP763637.1;MF471639.1;KJ911908.1;KJ911910.1Taraxacum brevicorniculatum rubber pathway sequence records |
| Laticiferous dandelionTaraxacum brevicorniculatumcis-1,4-polyisoprenePublic cDNA records | TbFDPS1KJ911908.1FDPS | Prenyl-donor metabolismPrenyl-donor synthesis reference | B_sequence_resource Sequence records support exact ID lookup and future homology mapping but do not independently establish function. Sequence record alone is not functional proof. | KP763637.1;MF471639.1;KJ911908.1;KJ911910.1Taraxacum brevicorniculatum rubber pathway sequence records |
| Laticiferous dandelionTaraxacum brevicorniculatumcis-1,4-polyisoprenePublic cDNA records | TbFDPS2KJ911910.1FDPS | Prenyl-donor metabolismPrenyl-donor synthesis reference | B_sequence_resource Sequence records support exact ID lookup and future homology mapping but do not independently establish function. Sequence record alone is not functional proof. | KP763637.1;MF471639.1;KJ911908.1;KJ911910.1Taraxacum brevicorniculatum rubber pathway sequence records |
| Laticiferous dandelionTaraxacum brevicorniculatumcis-1,4-polyisoprenePublic cDNA records | TbREFMF471639.1REF | REF/SRPP rubber-particle proteinsRubber-particle protein reference | B_sequence_resource Sequence records support exact ID lookup and future homology mapping but do not independently establish function. Sequence record alone is not functional proof. | KP763637.1;MF471639.1;KJ911908.1;KJ911910.1Taraxacum brevicorniculatum rubber pathway sequence records |
2000 candidates match the current filter; 10 are shown per page (page 11 of 200). TSV exports up to 2000 rows under the current filters. Use pathway nodes or summary cards to filter, then inspect Gene Card and linked modules for evidence details.
| Gene ID | Pathway/step | Confidence | Evidence layers | Location | Key evidence | Actions |
|---|---|---|---|---|---|---|
TkA01G561850TK1151: TkA01G561850 OH-1004: LXL04_001090 |
MVA/MEP and isoprenoid Prenyl-donor metabolism |
High score 10 |
FunctionGOExpressionLocalizationPfamSwiss-ProtPPICoexpression | CM104799.1:19989751-19992525 - |
go:0009824 amp dimethylallyltransferase activity molecular_function | |
TkA01G526400TK1151: TkA01G526400 OH-1004: LXL04_001550 |
MVA/MEP and isoprenoid Prenyl-donor metabolism |
High score 10 |
GOExpressionLocalizationPfamSwiss-ProtCoexpression | CM104799.1:28958260-28959614 + |
GO:0006720 | |
TkA01G522970TK1151: TkA01G522970 OH-1004: LXL04_001598 |
MVA/MEP and isoprenoid Mevalonate pathway |
High score 10 |
GOExpressionLocalizationPfamSwiss-ProtPPICoexpression | CM104799.1:29822753-29827340 - |
GO:0008299 | |
TkA01G492590TK1151: TkA01G492590 OH-1004: LXL04_002002 |
Latex/root related candidates Latex/root associated candidates |
High score 10 |
GOExpressionLocalizationPfamSwiss-ProtPPICoexpression | CM104799.1:38809573-38810232 - |
go:0006970 response to osmotic stress biological_process | |
TkA01G475480TK1151: TkA01G475480;TkA07G186220;TkA07G186860 OH-1004: LXL04_002187 |
Terpenoid metabolism Terpenoid metabolism |
High score 10 |
GOExpressionLocalizationPfamSwiss-ProtPPICoexpression | CM104799.1:43509327-43511401 + |
GO:0010333 | |
TkA01G402800TK1151: TkA01G402800 OH-1004: LXL04_003034 |
Terpenoid metabolism Terpenoid metabolism |
High score 10 |
FunctionGOExpressionLocalizationPfamSwiss-ProtPPICoexpression | CM104799.1:65386113-65404532 - |
go:0010686 tetracyclic triterpenoid biosynthetic process biological_process | |
LXL04_003040TK1151: - OH-1004: LXL04_003040 |
MVA/MEP and isoprenoid Prenyl-donor metabolism |
High score 10 |
GOExpressionLocalizationSwiss-Prot | CM104799.1:65621689-65621968 - |
GO:0016114 | |
TkA01G387270TK1151: TkA01G387270;TkA01G556620;TkA08G142540 OH-1004: LXL04_003181 |
MVA/MEP and isoprenoid Prenyl-donor metabolism |
High score 10 |
FunctionGOExpressionLocalizationPfamSwiss-ProtCoexpression | CM104799.1:70368002-70371154 - |
go:0004311 geranylgeranyl diphosphate synthase activity molecular_function | |
TkA01G105050TK1151: TkA01G105050 OH-1004: LXL04_004824 |
Latex/root related candidates Latex/root associated candidates |
High score 10 |
GOExpressionLocalizationPfamSwiss-ProtPPI | CM104799.1:147918774-147922111 - |
go:0010015 root morphogenesis biological_process | |
TkA01G095270TK1151: TkA01G095270 OH-1004: LXL04_004939 |
MVA/MEP and isoprenoid Prenyl-donor metabolism |
High score 10 |
FunctionGOExpressionLocalizationPfamSwiss-ProtPPICoexpression | CM104799.1:150602539-150603477 + |
go:0004663 rab geranylgeranyltransferase activity molecular_function |
TkA01G561850TkA01G526400TkA01G522970TkA01G492590TkA01G475480TkA01G402800LXL04_003040TkA01G387270TkA01G105050TkA01G095270Current results integrate annotation, GO/KEGG, homology, predicted localization, domains, expression/proteome and network evidence. High/Medium/Low indicates evidence density and consistency, not experimental validation.