Rubber Dandelion Resequencing Dataset

GSA CRA009020: whole-genome resequencing data for a Taraxacum kok-saghyz F1 mapping population. This page provides the official metadata index, sample search, file checksums, and original download links.

How to use this dataset

Search by sample name, Run, Experiment, or BioSample accession, then open the official HTTPS link for Read 1 or Read 2 in the matching row. Use the MD5 values to check file integrity before analysis. For batch work, download the complete metadata TSV and select files by Run accession.

Evidence boundary: this is an official catalog of downloadable raw reads, not an SNP/VCF variant-query result generated by this site. The large FASTQ files remain hosted by GSA and are not mirrored here. NCBI PRJNA1058564 was checked and states “No public data is linked”; use GSA CRA009020 as the public raw-data source.

GSA project page GSA HTTPS directory Download full metadata TSV

129samples

129paired WGS runs

2 × 150 bpIllumina NovaSeq 6000

CRA009020GSA accession

Associated phenotype data

This table is from Supplementary Table S7 of the associated paper and contains natural rubber content and six major QTL genotypes for 129 paper sample IDs. The public GSA names are 164L, X5H, and F1-*; because no public one-to-one crosswalk to R01–R129 was supplied, the original paper IDs are retained without invented mapping.

Download phenotype TSV

Source: Yang et al., BMC Genomics 2023, CRA009020/GVM000440; trait: natural rubber content (%).

Sample and file catalog

129 matching runs; 20 rows per page. Filenames, sizes, and MD5 values are taken from GSA CRA009020.xlsx.

Sample	Run / Experiment	Experiment	Read 1	Read 2
F1-74 SAMC997284	`CRR618523` CRX553441	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618523_f1.fq.gz` 2,214,639,630 bytes MD5 2b5e617e3297a60c15c0535f9d53f473	HTTPS `CRR618523_r2.fq.gz` 2,270,507,780 bytes MD5 24aac2e4c2e856c915abecd99c8a8e41
F1-75 SAMC997285	`CRR618524` CRX553442	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618524_f1.fq.gz` 2,392,941,033 bytes MD5 4e1d6b0006e90d5691ae320c5d24aa53	HTTPS `CRR618524_r2.fq.gz` 2,436,866,273 bytes MD5 d8265d6990018c1ae10c8e4bc09f34d3
F1-76 SAMC997286	`CRR618525` CRX553443	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618525_f1.fq.gz` 2,314,757,449 bytes MD5 cd3a815d204202e74c793299fdf620b6	HTTPS `CRR618525_r2.fq.gz` 2,371,734,099 bytes MD5 71d44853fadea95520c8c53eaf6b7cb6
F1-77 SAMC997287	`CRR618526` CRX553444	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618526_f1.fq.gz` 2,090,393,409 bytes MD5 ea26160da8e9b221283aabe48e2c5b7c	HTTPS `CRR618526_r2.fq.gz` 2,154,732,644 bytes MD5 59e34bc81e2a95f4597a353eab3a6f4e
F1-78 SAMC997288	`CRR618527` CRX553445	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618527_f1.fq.gz` 2,066,332,473 bytes MD5 1c674460591809bc83c1ce2459e93b27	HTTPS `CRR618527_r2.fq.gz` 2,119,196,879 bytes MD5 2d1a63826b61802cf0c089c6490067d7
F1-79 SAMC997289	`CRR618528` CRX553446	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618528_f1.fq.gz` 2,016,762,530 bytes MD5 8d9bb54ef0eb1016df277bfa1059662e	HTTPS `CRR618528_r2.fq.gz` 2,056,810,078 bytes MD5 6554e18f988d26d407244777b7468354
F1-80 SAMC997290	`CRR618529` CRX553447	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618529_f1.fq.gz` 2,276,708,643 bytes MD5 dc7401beebdeb9d61f25f7a5721ee29b	HTTPS `CRR618529_r2.fq.gz` 2,332,560,708 bytes MD5 fd91e52e851ccc67e1fc4f7f0fb9e141
F1-81 SAMC997291	`CRR618530` CRX553448	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618530_f1.fq.gz` 2,218,682,517 bytes MD5 4711058b5d348e6c917e6bf05ecaf851	HTTPS `CRR618530_r2.fq.gz` 2,283,828,200 bytes MD5 b99c63eebfbc91a823648d421c74ef32
F1-82 SAMC997292	`CRR618531` CRX553449	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618531_f1.fq.gz` 2,241,901,041 bytes MD5 919451a2c50789f573a533acc9b262ed	HTTPS `CRR618531_r2.fq.gz` 2,288,886,044 bytes MD5 e6500603dc1c3d51616ae08641ed6666
F1-83 SAMC997293	`CRR618532` CRX553450	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618532_f1.fq.gz` 2,278,681,406 bytes MD5 51f9dfc6912c9b6300102c89484c3d62	HTTPS `CRR618532_r2.fq.gz` 2,327,248,894 bytes MD5 8ba4087dc7f2dda120c3508ce91e6744
F1-84 SAMC997294	`CRR618533` CRX553451	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618533_f1.fq.gz` 2,248,022,464 bytes MD5 29e254c8402db4ad95db9ea5e296c2d9	HTTPS `CRR618533_r2.fq.gz` 2,334,225,935 bytes MD5 c7a57cc38c38dae511500df3ada66029
F1-85 SAMC997295	`CRR618534` CRX553452	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618534_f1.fq.gz` 2,504,191,078 bytes MD5 6163b81cd63b1744443d2767b18ad4e0	HTTPS `CRR618534_r2.fq.gz` 2,592,252,626 bytes MD5 c18a8aadccdefaeeaf2dace7c7a092a2
F1-86 SAMC997296	`CRR618535` CRX553453	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618535_f1.fq.gz` 2,049,769,856 bytes MD5 21e50ab6505678723ab1c93af0c194d9	HTTPS `CRR618535_r2.fq.gz` 2,099,558,379 bytes MD5 fb988b710f30a5030e99586f27ad46f1
F1-87 SAMC997297	`CRR618536` CRX553454	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618536_f1.fq.gz` 2,217,916,186 bytes MD5 293a4793d9186bc6d0d36f6bd9207f99	HTTPS `CRR618536_r2.fq.gz` 2,281,141,824 bytes MD5 297c2ac472329578632a6834fc43d226
F1-88 SAMC997298	`CRR618537` CRX553455	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618537_f1.fq.gz` 2,353,376,016 bytes MD5 62c870f63d1c824862700b3235dba18d	HTTPS `CRR618537_r2.fq.gz` 2,437,853,733 bytes MD5 c14791095dc49aab8ac6350bb3a9e1c6
F1-89 SAMC997299	`CRR618538` CRX553456	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618538_f1.fq.gz` 2,210,444,888 bytes MD5 7399adb3d1dbadbae641ae7c65a6f760	HTTPS `CRR618538_r2.fq.gz` 2,283,521,982 bytes MD5 d9e5fc3832b897dc7b1063748a6daa1c
F1-90 SAMC997300	`CRR618539` CRX553457	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618539_f1.fq.gz` 2,443,063,038 bytes MD5 953fbf55ff8eb395801c7bc2dfa27d12	HTTPS `CRR618539_r2.fq.gz` 2,527,889,005 bytes MD5 5100de902c416438bfa29fb7f28778cc
F1-91 SAMC997301	`CRR618540` CRX553458	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618540_f1.fq.gz` 2,367,861,672 bytes MD5 81c720c23081537d1b11c17b74bbeed7	HTTPS `CRR618540_r2.fq.gz` 2,451,540,070 bytes MD5 ae5952c75eb102e03cfccbe8c8df5e00
F1-92 SAMC997302	`CRR618541` CRX553459	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618541_f1.fq.gz` 2,420,197,699 bytes MD5 d165455ff5b9a5a59e2bf5d726445cff	HTTPS `CRR618541_r2.fq.gz` 2,504,024,990 bytes MD5 db930f31d07c3bc2b88694360a4c97cb
F1-93 SAMC997303	`CRR618542` CRX553460	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618542_f1.fq.gz` 2,111,242,831 bytes MD5 550cb247182153d8938a0f69b0d5bb98	HTTPS `CRR618542_r2.fq.gz` 2,177,788,723 bytes MD5 0a369e06db93e0744985d28ad9a3b6f0

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