Rubber Dandelion Resequencing Dataset

GSA CRA009020: whole-genome resequencing data for a Taraxacum kok-saghyz F1 mapping population. This page provides the official metadata index, sample search, file checksums, and original download links.

How to use this dataset

Search by sample name, Run, Experiment, or BioSample accession, then open the official HTTPS link for Read 1 or Read 2 in the matching row. Use the MD5 values to check file integrity before analysis. For batch work, download the complete metadata TSV and select files by Run accession.

Evidence boundary: this is an official catalog of downloadable raw reads, not an SNP/VCF variant-query result generated by this site. The large FASTQ files remain hosted by GSA and are not mirrored here. NCBI PRJNA1058564 was checked and states “No public data is linked”; use GSA CRA009020 as the public raw-data source.

GSA project page GSA HTTPS directory Download full metadata TSV

129samples

129paired WGS runs

2 × 150 bpIllumina NovaSeq 6000

CRA009020GSA accession

Associated phenotype data

This table is from Supplementary Table S7 of the associated paper and contains natural rubber content and six major QTL genotypes for 129 paper sample IDs. The public GSA names are 164L, X5H, and F1-*; because no public one-to-one crosswalk to R01–R129 was supplied, the original paper IDs are retained without invented mapping.

Download phenotype TSV

Source: Yang et al., BMC Genomics 2023, CRA009020/GVM000440; trait: natural rubber content (%).

Sample and file catalog

129 matching runs; 20 rows per page. Filenames, sizes, and MD5 values are taken from GSA CRA009020.xlsx.

Sample	Run / Experiment	Experiment	Read 1	Read 2
F1-44 SAMC997264	`CRR618503` CRX553421	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618503_f1.fq.gz` 2,334,018,089 bytes MD5 07d7ebaa1d7d7b55749629c46fb54d55	HTTPS `CRR618503_r2.fq.gz` 2,402,196,832 bytes MD5 326584b0727d005d472386db37ead18b
F1-45 SAMC997265	`CRR618504` CRX553422	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618504_f1.fq.gz` 2,314,997,853 bytes MD5 7b5d88a078d55ea97dd1fe83813da867	HTTPS `CRR618504_r2.fq.gz` 2,372,539,589 bytes MD5 84aa83a58a30970905ca67e2b2ea098e
F1-46 SAMC997266	`CRR618505` CRX553423	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618505_f1.fq.gz` 2,063,847,968 bytes MD5 061ed953b7e4a30b5bd1406a08072da2	HTTPS `CRR618505_r2.fq.gz` 2,123,092,900 bytes MD5 b594e3d007a881cf0a9acbc7079f5236
F1-48 SAMC997267	`CRR618506` CRX553424	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618506_f1.fq.gz` 2,326,002,389 bytes MD5 588a81c8a308504eb76147dcad973ecf	HTTPS `CRR618506_r2.fq.gz` 2,410,128,743 bytes MD5 2d0dc0fbb3e41e0dc21c8b14f4e2955e
F1-49 SAMC997268	`CRR618507` CRX553425	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618507_f1.fq.gz` 2,347,820,743 bytes MD5 58bd72468a87cd3c68a08b9a739f470c	HTTPS `CRR618507_r2.fq.gz` 2,402,847,817 bytes MD5 4d6e7d46cb587900cc7f430577937569
F1-51 SAMC997269	`CRR618508` CRX553426	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618508_f1.fq.gz` 2,102,758,495 bytes MD5 6c1302f883c759cacd2ba753416bb52b	HTTPS `CRR618508_r2.fq.gz` 2,164,561,964 bytes MD5 3a511b8e9f560ff5e29195f7a8137986
F1-53 SAMC997270	`CRR618509` CRX553427	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618509_f1.fq.gz` 2,286,565,053 bytes MD5 5f13413f9ccd2b75eb1bc27b5db0c81d	HTTPS `CRR618509_r2.fq.gz` 2,335,445,455 bytes MD5 69f4d265f78c3b023f67ee867f8b8aab
F1-55 SAMC997271	`CRR618510` CRX553428	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618510_f1.fq.gz` 2,382,844,653 bytes MD5 e0a5696620923394fc2875231624a55b	HTTPS `CRR618510_r2.fq.gz` 2,438,090,264 bytes MD5 a2639c5c7c8ddcdf41bb5284d40ac3f4
F1-56 SAMC997272	`CRR618511` CRX553429	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618511_f1.fq.gz` 2,365,102,674 bytes MD5 f17efe83a8fb07eaa4d4d0d889386fc8	HTTPS `CRR618511_r2.fq.gz` 2,431,920,102 bytes MD5 99be58cc94b21711cb33f2f95143d72e
F1-58 SAMC997273	`CRR618512` CRX553430	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618512_f1.fq.gz` 2,333,555,447 bytes MD5 1878e6709d8c029276422fc08e700fc1	HTTPS `CRR618512_r2.fq.gz` 2,373,213,301 bytes MD5 19fc4c4d93da9d8f273dc28bbaf4e89f
F1-61 SAMC997274	`CRR618513` CRX553431	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618513_f1.fq.gz` 2,326,622,027 bytes MD5 7aa8dc4a900321cb617461b9b4d2b803	HTTPS `CRR618513_r2.fq.gz` 2,376,196,623 bytes MD5 f1fa59696406ce3fc068b47ce4669d80
F1-62 SAMC997275	`CRR618514` CRX553432	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618514_f1.fq.gz` 2,096,678,897 bytes MD5 2323857a5e1904eb989d22ea2b9867cf	HTTPS `CRR618514_r2.fq.gz` 2,150,917,527 bytes MD5 bc305f3536e5c98a7b0c076fff154d2b
F1-63 SAMC997276	`CRR618515` CRX553433	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618515_f1.fq.gz` 2,018,557,586 bytes MD5 04a579b76673c02ea69af6d135b98a60	HTTPS `CRR618515_r2.fq.gz` 2,079,924,854 bytes MD5 8cae4dd94d0c781e67866469008d5f5f
F1-64 SAMC997277	`CRR618516` CRX553434	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618516_f1.fq.gz` 2,303,460,362 bytes MD5 e341387f9e5c5dc7a34a4ad4fa448954	HTTPS `CRR618516_r2.fq.gz` 2,360,887,225 bytes MD5 2b35f35ce802ed2f2247c572561e09e2
F1-65 SAMC997278	`CRR618517` CRX553435	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618517_f1.fq.gz` 2,245,377,264 bytes MD5 f193fa5677e27c8071e3a1905922c314	HTTPS `CRR618517_r2.fq.gz` 2,309,082,936 bytes MD5 419ce07e4ab4eb4c8c0301750a3e3331
F1-66 SAMC997279	`CRR618518` CRX553436	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618518_f1.fq.gz` 2,296,183,257 bytes MD5 837fb48f575f42911fe3beee15d97808	HTTPS `CRR618518_r2.fq.gz` 2,365,929,858 bytes MD5 c6e7f7dab2c10cec644c19ab5e56391b
F1-68 SAMC997280	`CRR618519` CRX553437	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618519_f1.fq.gz` 2,124,115,238 bytes MD5 3e35b0b244788f749932c336ebf13eec	HTTPS `CRR618519_r2.fq.gz` 2,179,715,812 bytes MD5 cb8d42d98699e6dd4b84f508d5665688
F1-71 SAMC997281	`CRR618520` CRX553438	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618520_f1.fq.gz` 2,176,373,783 bytes MD5 a13048ff201e8e2f8a38fb1cecb8560d	HTTPS `CRR618520_r2.fq.gz` 2,221,835,430 bytes MD5 a47381826f5e210d97c07219c1a53135
F1-72 SAMC997282	`CRR618521` CRX553439	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618521_f1.fq.gz` 2,431,780,818 bytes MD5 4c3372d29803722902e8d622278b7f51	HTTPS `CRR618521_r2.fq.gz` 2,500,883,692 bytes MD5 f7210132beba3545066842237a588a2d
F1-73 SAMC997283	`CRR618522` CRX553440	Illumina NovaSeq 6000 WGS · PAIRED · leaf maturation stage	HTTPS `CRR618522_f1.fq.gz` 2,292,010,609 bytes MD5 452c4c7d87d2c67679478382f7908624	HTTPS `CRR618522_r2.fq.gz` 2,336,846,140 bytes MD5 1b37821559be07fb52a02c7834c2ffbb

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