Proteomics query

Enter gene or protein IDs and select one or more datasets to view abundance, replicate identification and 2-DE evidence.

3 selectable datasets · 3 independent public projects · 56 LFQ experiments plus 3 mature-root identification replicates

Gene / protein IDs (up to 30; separate with newlines, spaces or commas)

Root proteomes of latex-exuding and non-exuding plants · PXD011773 · 36 samplesRoot tissue (whole-root protein extract) · 8, 12 and 24 weeks old · LFQ intensity · 9040 protein groups · Gene / protein ID lookup · PRIDE PXD011773Root-latex proteomes of CPTL1 knockdown lines and wild type · PXD010953 · 20 samplesRoot latex (laticifer cytoplasm) · 14 weeks old · LFQ intensity · 3981 protein groups · Gene / protein ID lookup · PRIDE PXD0109532019 mature roots · six-month main roots · 3 biological replicates · identification / 2-DETotal protein from middle sections of main roots · Six months · Identification and spot relative volume · not LFQ · 7481 source protein IDs · Gene / protein ID lookup · Paper and supplementary tables

Projects are shown separately with independent plot scales; LFQ intensities are not directly comparable across projects. Aliases resolved to the same gene are deduplicated; multiple protein groups linked to a gene are summarized separately.

Examples

Transcript expression query

Download selected abundance datasets and queried genes (TSV) · 36 abundance records

Root proteomes of latex-exuding and non-exuding plants · LFQ intensity

Source accession: PRIDE PXD011773

Paper: View study design

Samples and quantification: 36 LFQ experiments · 9040 protein groups · MaxQuant

Species: Rubber dandelion (Taraxacum koksaghyz)

Sample tissue/type: Root tissue (whole-root protein extract)

Treatment/comparison: Compare latex-exuding controls, latex-exuding barstar controls and non-exuding barnase/barstar plants at three developmental ages.

Sampling age: 8, 12 and 24 weeks old

Groups and replicates: Four biological replicates per age and genotype: 3 genotypes x 3 ages x 4 replicates = 36 quantified samples.

Material/group	Group meaning
Latex-exuding control	Latex-exuding background control; archived as WT.
Latex-exuding transgenic control	Barstar-only transgenic control that exudes latex.
Non-exuding line	Barnase/barstar double-transgenic plants that do not exude latex.

LFQ quantification is at the protein-group level. Cross-version gene mappings retain evidence tiers and do not establish unique protein identification. Source zeros are retained and do not establish protein absence.

ID Resolution

Input ID	Display ID	Linked lookup ID	Protein groups	Values	Status
`TkA04G464000`	`TkA04G464000`	`LXL04_029705`	8667	36	Resolved

Group Summary

Download current dataset and queried genes (TSV)

Mean LFQ intensity, sample SD, SE and experiment count n are computed for each protein group using source time/group labels, retaining source zeros. Bars show mean LFQ intensity with an independent scale per dataset.

TkA04G464000 · 8 weeks old Latex-exuding control · Group 86675.81e+06

TkA04G464000 · 8 weeks old Latex-exuding transgenic control · Group 86675.35e+06

TkA04G464000 · 8 weeks old Non-exuding line · Group 86672.02e+07

TkA04G464000 · 12 weeks old Latex-exuding control · Group 86674.88e+07

TkA04G464000 · 12 weeks old Latex-exuding transgenic control · Group 86671.59e+07

TkA04G464000 · 12 weeks old Non-exuding line · Group 86671.74e+08

TkA04G464000 · 24 weeks old Latex-exuding control · Group 86672.05e+08

TkA04G464000 · 24 weeks old Latex-exuding transgenic control · Group 86671.61e+08

TkA04G464000 · 24 weeks old Non-exuding line · Group 86674.98e+08

Gene / protein ID	Protein group	Tissue/sample	Material/group	Sampling age	Mean intensity	SD	SE	n	Unit
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Latex-exuding control	8 weeks old	5.80838e+06	6.13689e+06	3.06844e+06	4	LFQ intensity
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	8 weeks old	5.35118e+06	2.56192e+06	1.28096e+06	4	LFQ intensity
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Non-exuding line	8 weeks old	2.01782e+07	1.22254e+07	6.11272e+06	4	LFQ intensity
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Latex-exuding control	12 weeks old	4.87825e+07	8.16385e+07	4.08192e+07	4	LFQ intensity
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	12 weeks old	1.5928e+07	1.19674e+07	5.98369e+06	4	LFQ intensity
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Non-exuding line	12 weeks old	1.73737e+08	1.35028e+08	6.75141e+07	4	LFQ intensity
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Latex-exuding control	24 weeks old	2.04892e+08	1.39112e+08	6.95562e+07	4	LFQ intensity
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	24 weeks old	1.61055e+08	2.42963e+07	1.21481e+07	4	LFQ intensity
`TkA04G464000`	8667	Root tissue (whole-root protein extract)	Non-exuding line	24 weeks old	4.98135e+08	2.3928e+08	1.1964e+08	4	LFQ intensity

Sample-Level Protein Abundance

Gene / protein ID	Protein group	Sample	Tissue/sample	Material/group	Sampling age	Replicate	Abundance	Unit	Source
`TkA04G464000`	8667	8 weeks old · Latex-exuding control · Biological replicate 1 `PAP73`	Root tissue (whole-root protein extract)	Latex-exuding control	8 weeks old	Biological replicate 1	3788900.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Latex-exuding control · Biological replicate 2 `PAP74`	Root tissue (whole-root protein extract)	Latex-exuding control	8 weeks old	Biological replicate 2	1636600.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Latex-exuding control · Biological replicate 3 `PAP75`	Root tissue (whole-root protein extract)	Latex-exuding control	8 weeks old	Biological replicate 3	14918000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Latex-exuding control · Biological replicate 4 `PAP76`	Root tissue (whole-root protein extract)	Latex-exuding control	8 weeks old	Biological replicate 4	2890000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Latex-exuding transgenic control · Biological replicate 1 `PAP77`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	8 weeks old	Biological replicate 1	6483200.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Latex-exuding transgenic control · Biological replicate 2 `PAP78`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	8 weeks old	Biological replicate 2	7422400.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Latex-exuding transgenic control · Biological replicate 3 `PAP79`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	8 weeks old	Biological replicate 3	5869500.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Latex-exuding transgenic control · Biological replicate 4 `PAP80`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	8 weeks old	Biological replicate 4	1629600.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Non-exuding line · Biological replicate 1 `PAP81`	Root tissue (whole-root protein extract)	Non-exuding line	8 weeks old	Biological replicate 1	32726000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Non-exuding line · Biological replicate 2 `PAP82`	Root tissue (whole-root protein extract)	Non-exuding line	8 weeks old	Biological replicate 2	26900000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Non-exuding line · Biological replicate 3 `PAP83`	Root tissue (whole-root protein extract)	Non-exuding line	8 weeks old	Biological replicate 3	5061800.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	8 weeks old · Non-exuding line · Biological replicate 4 `PAP84`	Root tissue (whole-root protein extract)	Non-exuding line	8 weeks old	Biological replicate 4	16025000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Latex-exuding control · Biological replicate 1 `PAP85`	Root tissue (whole-root protein extract)	Latex-exuding control	12 weeks old	Biological replicate 1	2431200.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Latex-exuding control · Biological replicate 2 `PAP86`	Root tissue (whole-root protein extract)	Latex-exuding control	12 weeks old	Biological replicate 2	170900000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Latex-exuding control · Biological replicate 3 `PAP87`	Root tissue (whole-root protein extract)	Latex-exuding control	12 weeks old	Biological replicate 3	16518000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Latex-exuding control · Biological replicate 4 `PAP88`	Root tissue (whole-root protein extract)	Latex-exuding control	12 weeks old	Biological replicate 4	5280800.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Latex-exuding transgenic control · Biological replicate 1 `PAP89`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	12 weeks old	Biological replicate 1	33482000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Latex-exuding transgenic control · Biological replicate 2 `PAP90`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	12 weeks old	Biological replicate 2	13446000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Latex-exuding transgenic control · Biological replicate 3 `PAP91`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	12 weeks old	Biological replicate 3	7451600.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Latex-exuding transgenic control · Biological replicate 4 `PAP92`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	12 weeks old	Biological replicate 4	9332400.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Non-exuding line · Biological replicate 1 `PAP93`	Root tissue (whole-root protein extract)	Non-exuding line	12 weeks old	Biological replicate 1	7848200.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Non-exuding line · Biological replicate 2 `PAP94`	Root tissue (whole-root protein extract)	Non-exuding line	12 weeks old	Biological replicate 2	238480000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Non-exuding line · Biological replicate 3 `PAP95`	Root tissue (whole-root protein extract)	Non-exuding line	12 weeks old	Biological replicate 3	318840000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	12 weeks old · Non-exuding line · Biological replicate 4 `PAP96`	Root tissue (whole-root protein extract)	Non-exuding line	12 weeks old	Biological replicate 4	129780000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Latex-exuding control · Biological replicate 1 `PAP97`	Root tissue (whole-root protein extract)	Latex-exuding control	24 weeks old	Biological replicate 1	186810000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Latex-exuding control · Biological replicate 2 `PAP98`	Root tissue (whole-root protein extract)	Latex-exuding control	24 weeks old	Biological replicate 2	126080000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Latex-exuding control · Biological replicate 3 `PAP99`	Root tissue (whole-root protein extract)	Latex-exuding control	24 weeks old	Biological replicate 3	100330000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Latex-exuding control · Biological replicate 4 `PAP100`	Root tissue (whole-root protein extract)	Latex-exuding control	24 weeks old	Biological replicate 4	406350000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Latex-exuding transgenic control · Biological replicate 1 `PAP101`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	24 weeks old	Biological replicate 1	177630000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Latex-exuding transgenic control · Biological replicate 2 `PAP102`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	24 weeks old	Biological replicate 2	138130000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Latex-exuding transgenic control · Biological replicate 3 `PAP103`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	24 weeks old	Biological replicate 3	142430000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Latex-exuding transgenic control · Biological replicate 4 `PAP104`	Root tissue (whole-root protein extract)	Latex-exuding transgenic control	24 weeks old	Biological replicate 4	186030000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Non-exuding line · Biological replicate 1 `PAP105`	Root tissue (whole-root protein extract)	Non-exuding line	24 weeks old	Biological replicate 1	367040000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Non-exuding line · Biological replicate 2 `PAP106`	Root tissue (whole-root protein extract)	Non-exuding line	24 weeks old	Biological replicate 2	702400000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Non-exuding line · Biological replicate 3 `PAP107`	Root tissue (whole-root protein extract)	Non-exuding line	24 weeks old	Biological replicate 3	696260000.0	LFQ intensity	PXD011773
`TkA04G464000`	8667	24 weeks old · Non-exuding line · Biological replicate 4 `PAP108`	Root tissue (whole-root protein extract)	Non-exuding line	24 weeks old	Biological replicate 4	226840000.0	LFQ intensity	PXD011773

Data source and protein identification

PRIDE PXD011773 · MaxQuant · 108 raw mass-spectrometry files

Archived labels 8d, 12d and 24d correspond to 8-, 12- and 24-week-old plants in the paper. The page shows verified ages; downloads retain source labels and add verified age fields.

Original download fields retain archived labels; added fields provide verified age, tissue, replication and localized group labels.

TkA04G464000

Protein group 8667 · Peptides: 16 · Unique peptides: 16 · Sequence coverage: 28.9%

Mapping evidence: Source mapping category; see original label in download

Sample design and raw-file catalogue

Experiment	Sampling age	Material/group	Replicate	Raw files
PAP73	8 weeks old	Latex-exuding control	Biological replicate 1	3
PAP74	8 weeks old	Latex-exuding control	Biological replicate 2	3
PAP75	8 weeks old	Latex-exuding control	Biological replicate 3	3
PAP76	8 weeks old	Latex-exuding control	Biological replicate 4	3
PAP77	8 weeks old	Latex-exuding transgenic control	Biological replicate 1	3
PAP78	8 weeks old	Latex-exuding transgenic control	Biological replicate 2	3
PAP79	8 weeks old	Latex-exuding transgenic control	Biological replicate 3	3
PAP80	8 weeks old	Latex-exuding transgenic control	Biological replicate 4	3
PAP81	8 weeks old	Non-exuding line	Biological replicate 1	3
PAP82	8 weeks old	Non-exuding line	Biological replicate 2	3
PAP83	8 weeks old	Non-exuding line	Biological replicate 3	3
PAP84	8 weeks old	Non-exuding line	Biological replicate 4	3
PAP85	12 weeks old	Latex-exuding control	Biological replicate 1	3
PAP86	12 weeks old	Latex-exuding control	Biological replicate 2	3
PAP87	12 weeks old	Latex-exuding control	Biological replicate 3	3
PAP88	12 weeks old	Latex-exuding control	Biological replicate 4	3
PAP89	12 weeks old	Latex-exuding transgenic control	Biological replicate 1	3
PAP90	12 weeks old	Latex-exuding transgenic control	Biological replicate 2	3
PAP91	12 weeks old	Latex-exuding transgenic control	Biological replicate 3	3
PAP92	12 weeks old	Latex-exuding transgenic control	Biological replicate 4	3
PAP93	12 weeks old	Non-exuding line	Biological replicate 1	3
PAP94	12 weeks old	Non-exuding line	Biological replicate 2	3
PAP95	12 weeks old	Non-exuding line	Biological replicate 3	3
PAP96	12 weeks old	Non-exuding line	Biological replicate 4	3
PAP97	24 weeks old	Latex-exuding control	Biological replicate 1	3
PAP98	24 weeks old	Latex-exuding control	Biological replicate 2	3
PAP99	24 weeks old	Latex-exuding control	Biological replicate 3	3
PAP100	24 weeks old	Latex-exuding control	Biological replicate 4	3
PAP101	24 weeks old	Latex-exuding transgenic control	Biological replicate 1	3
PAP102	24 weeks old	Latex-exuding transgenic control	Biological replicate 2	3
PAP103	24 weeks old	Latex-exuding transgenic control	Biological replicate 3	3
PAP104	24 weeks old	Latex-exuding transgenic control	Biological replicate 4	3
PAP105	24 weeks old	Non-exuding line	Biological replicate 1	3
PAP106	24 weeks old	Non-exuding line	Biological replicate 2	3
PAP107	24 weeks old	Non-exuding line	Biological replicate 3	3
PAP108	24 weeks old	Non-exuding line	Biological replicate 4	3