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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG004850
Reference: TK1151 Chr: ChrUn Coordinates: 1452372-1459032 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2490 bp · TkAUNG004850|TK1151|cDNA

ATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGATCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAGCGTTGGCTAGGTAAGCGCCCTGTAGTAAG...

CDS

Download CDS FASTA

2490 bp · TkAUNG004850|TK1151|CDS

ATGCCCTTAGGCACGACCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGATCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAGCGTTGGCTAGGTAAGCGCCCTGTAGTAAG...

Protein

Download Protein FASTA

829 aa · TkAUNG004850|TK1151|PROTEIN

MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPALGKRTANASFNMGSNEANLVISKAEMNLQKEFHSVNRKLNIAITRIEKPYGNPNILAEFIAGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALEPAW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG004850
TK1151 IDTkAUNG004850
OH-1004 IDLXL04_033458
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)50.800
Protein coverage (%)TK1151 14.355 / OH-1004 30.846
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG004850
LocationChrUn:1452372-1459032 (+)
DescriptionSimilar to RPL2: 60S ribosomal protein L2, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033458 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006412 translation Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005762 mitochondrial large ribosomal subunit Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0015934 large ribosomal subunit Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003735 structural constituent of ribosome Molecular Function
GO:0016740 transferase activity Molecular Function
KEGG gene cross-reference
ath:AT2G44065
dosa:rpl2
osa:6450181
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.853
Rank 1 · TkAUNG004850 · TK1151
Cytoplasm0.126
Rank 2 · TkAUNG004850 · TK1151
Mitochondrion0.119
Rank 3 · TkAUNG004850 · TK1151
Nucleus0.039
Rank 4 · TkAUNG004850 · TK1151
Peroxisome0.023
Rank 5 · TkAUNG004850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03947Ribosomal_L2_C1-117 aa
PF05316VAR1135-186 aa
PF00189Ribosomal_S3_C180-255 aa
PF00411Ribosomal_S11195-220 aa
PF05316VAR1206-229 aa
PF00252Ribosomal_L16255-327 aa
PF00238Ribosomal_L14322-434 aa
PF03947Ribosomal_L2_C375-405 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG004850PF03947Ribosomal_L2_C11172.7e-48163.9
TkAUNG004850PF05316VAR11351860.003218.2
TkAUNG004850PF00189Ribosomal_S3_C1802559.3e-2587.7
TkAUNG004850PF00411Ribosomal_S111952202.8e-2279.9
TkAUNG004850PF05316VAR12062290.003218.2
TkAUNG004850PF00252Ribosomal_L162553271.6e-30106.5
TkAUNG004850PF00238Ribosomal_L143224342.1e-43147.7
TkAUNG004850PF03947Ribosomal_L2_C3754052.7e-48163.9
TkAUNG004850PF01176eIF-1a4465101.1e-0835.1
TkAUNG004850PF00411Ribosomal_S115025702.8e-2279.9
TkAUNG004850PF00189Ribosomal_S3_C5315559.3e-2587.7
TkAUNG004850PF01193RNA_pol_L5997861.2e-1351.3
TkAUNG004850PF01000RNA_pol_A_bac6317398.8e-2175.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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