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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G034610
Reference: TK1151 Chr: Chr08 Coordinates: 8844406-8852221 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4114 bp · TkA08G034610|TK1151|cDNA

AAATGTATATAATTTTAATTAGATAAAAGAATTCACTAAAATATTCGGACACTTGAGGAAGTCAATTAAGCGATTTTTAGGAGAAACGGCGTAGTTAACTTTGACAGATGTTTTCAGTGTTTATGACTCTCTCTTCCTTCACTTTTTGAGCTTCCATCGCCATTAGTGATAAGCACGTCTGTCGTCTGTCACTCATCATTCTCCCCAACTTCCCTTTTTCTCTTCCATCTCTCATCTCTTTCTGCCCACGTTTTTCCTCT...

CDS

Download CDS FASTA

2895 bp · TkA08G034610|TK1151|CDS

ATGTCTGTATCTATGAGAGATTTGGATCCAGCCTTTCAAGGAGCTGGACAAAAAGCAGGAATTGAAGTGTGGCGAATTGAGAATTTCAAACCAGTGGCTGTTCCACAATCTTCTTACGGGAAGTTTTTTACAGGGGACTCCTATGTTATCTTGAAGACCATTGCTTTAAAAAGTGGTGCATTACGTCACGACATTCACTATTGGCTCGGTAAAGACACAAGTCAGGATGAAGCTGGAACAGCAGCCTTGAAGACAGTTGA...

Protein

Download Protein FASTA

964 aa · TkA08G034610|TK1151|PROTEIN

MSVSMRDLDPAFQGAGQKAGIEVWRIENFKPVAVPQSSYGKFFTGDSYVILKTIALKSGALRHDIHYWLGKDTSQDEAGTAALKTVELDAALGGRAVQYREVQGHETERFLSYFKPCIIPQEGGVASGFKHAEAEEHKIRMFTCQGKHVVHVKEVPFARSSLNHDDIFILDTANKIFQFNGSNSCIQERAKALEVVQHIKDTYHDGKCDIATVEDGKLMSDAETGEFWGFFGGFAPLPRKTATDDTKTSDALPTQLFCVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G034610
TK1151 IDTkA08G034610
OH-1004 IDLXL04_002956
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)60.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G034610
LocationChr08:8844406-8852221 (-)
DescriptionSimilar to VLN4: Villin-4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g30160 Binds actin and actin bundles independently of Ca²⁺, but caps filament barbed ends and severs filaments in a calcium-dependent manner.
Arabidopsis VILLIN4 is involved in root hair growth through regulating actin organization in a Ca2+-dependent manner.2011 · DOI: 10.1111/j.1469-8137.2010.03632.x
The universal bundling activity of AtVLN4 in diffusely growing cells.2011 · DOI: 10.4161/psb.6.9.16501

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0240800 Ca(2+)-regulated actin-binding protein (By similarity). No verified direct reference in this release
Os06g0659300 Ca(2+)-regulated actin-binding protein. No verified direct reference in this release
Os04g0604000 Ca(2+)-regulated actin-binding protein (By similarity). No verified direct reference in this release
UniProt: B8ATT7 Ca(2+)-regulated actin-binding protein (By similarity). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002956 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007015 actin filament organization Biological Process
GO:0030042 actin filament depolymerization Biological Process
GO:0048767 root hair elongation Biological Process
GO:0051014 actin filament severing Biological Process
GO:0051592 response to calcium ion Biological Process
GO:0051693 actin filament capping Biological Process
GO:0051764 actin crosslink formation Biological Process
GO:0099636 cytoplasmic streaming Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0015629 actin cytoskeleton Cellular Component
KEGG gene cross-reference
ath:AT4G30160
ath:AT5G57320
dosa:Os04g0604000
dosa:Os06g0659300
dosa:Os08g0240800
osa:4341731
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.733
Rank 1 · TkA08G034610 · TK1151
Nucleus0.200
Rank 2 · TkA08G034610 · TK1151
Cell membrane0.196
Rank 3 · TkA08G034610 · TK1151
Golgi apparatus0.075
Rank 4 · TkA08G034610 · TK1151
Endoplasmic reticulum0.055
Rank 5 · TkA08G034610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00626Gelsolin28-111 aa
PF25480DUF790433-113 aa
PF25466MPK1_gelsolin_C48-80 aa
PF00626Gelsolin149-217 aa
PF00626Gelsolin267-335 aa
PF25480DUF7904290-337 aa
PF25466MPK1_gelsolin_C291-318 aa
PF25480DUF7904395-486 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G034610PF00626Gelsolin281114.7e-64212.9
TkA08G034610PF25480DUF7904331131.3e-1351.3
TkA08G034610PF25466MPK1_gelsolin_C48801.8e-0628.8
TkA08G034610PF00626Gelsolin1492174.7e-64212.9
TkA08G034610PF00626Gelsolin2673354.7e-64212.9
TkA08G034610PF25480DUF79042903371.3e-1351.3
TkA08G034610PF25466MPK1_gelsolin_C2913181.8e-0628.8
TkA08G034610PF25480DUF79043954861.3e-1351.3
TkA08G034610PF00626Gelsolin4114794.7e-64212.9
TkA08G034610PF25466MPK1_gelsolin_C4134651.8e-0628.8
TkA08G034610PF00626Gelsolin5365694.7e-64212.9
TkA08G034610PF25466MPK1_gelsolin_C5545661.8e-0628.8
TkA08G034610PF25480DUF79045576051.3e-1351.3
TkA08G034610PF25466MPK1_gelsolin_C5836031.8e-0628.8
TkA08G034610PF00626Gelsolin6387124.7e-64212.9
TkA08G034610PF25466MPK1_gelsolin_C6567141.8e-0628.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O65570Arabidopsis thalianasp|O65570|VILI4_ARATH Villin-471.900%Swiss-ProtHigh
Q0J716Oryza sativa subsp. japonicasp|Q0J716|VLN5_ORYSJ Villin-566.500%Swiss-ProtHigh
Q67U26Oryza sativa subsp. japonicasp|Q67U26|VLN3_ORYSJ Villin-365.100%Swiss-ProtHigh
Q0JAD9Oryza sativa subsp. japonicasp|Q0JAD9|VLN4_ORYSJ Villin-463.700%Swiss-ProtHigh
B8ATT7Oryza sativa subsp. indicasp|B8ATT7|VLN4_ORYSI Villin-463.700%Swiss-ProtHigh

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