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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G025300
Reference: TK1151 Chr: Chr07 Coordinates: 6776287-6778411 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1226 bp · TkA07G025300|TK1151|cDNA

AAAATCCCCATGGAAAACTGAGATGGAAAACATGGAGAGAAAAAGATTCGATAGTCTTGAATCATGGTCAATGATTTTGGATTCGGAAAACGTAGAGACATGGGAAGTGGCTAAGGAAGATCAAGAAGAATGGACGGCTGATCTTTCACAGCTATTCATAGGTAATAAGTTTGCTTCTGGTGCTCATAGTAGGATTTATAGAGGGATCTACAAACAAAGAGCTGTGGCTGTGAAAATGGTGAGGATCCCAACTCATAAAG...

CDS

Download CDS FASTA

1029 bp · TkA07G025300|TK1151|CDS

ATGGAAAACATGGAGAGAAAAAGATTCGATAGTCTTGAATCATGGTCAATGATTTTGGATTCGGAAAACGTAGAGACATGGGAAGTGGCTAAGGAAGATCAAGAAGAATGGACGGCTGATCTTTCACAGCTATTCATAGGTAATAAGTTTGCTTCTGGTGCTCATAGTAGGATTTATAGAGGGATCTACAAACAAAGAGCTGTGGCTGTGAAAATGGTGAGGATCCCAACTCATAAAGAAGAAACAAGAGTCATGCTTGA...

Protein

Download Protein FASTA

342 aa · TkA07G025300|TK1151|PROTEIN

MENMERKRFDSLESWSMILDSENVETWEVAKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTHKEETRVMLENQFKSEVSLLSRLYHPNIVQFIAACKKPPVYCIIMEYMSQGTLRMYLNKKEPYSLSTETVLRLALDISRGMEYLHSQGVVHRDLKSNNLLLNDEMRVKVADFGTSCLETQTQESKGNMGTYRWMAPEMVKEKPYTRKVDVYSFGIVLWELITALLPFQGMTPVQAAFAVAEKN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G025300
TK1151 IDTkA07G025300
OH-1004 IDLXL04_027015
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 91.444
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G025300
LocationChr07:6776287-6778411 (+)
DescriptionSimilar to HT1: Serine/threonine/tyrosine-protein kinase HT1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g62400 Serine/threonine/tyrosine kinase involved in the control of stomatal movement in response to CO(2). No verified direct reference in this release
At2g24360 Serine/threonine protein kinase that phosphorylates proteins on serine, threonine and tyrosine residues.
Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases.2006 · DOI: 10.1007/s11103-005-4109-7
At4g38470 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
At4g35780 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
At2g17700 Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).
A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027015 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0007165 signal transduction Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0010344 seed oilbody biogenesis Biological Process
GO:0045995 regulation of embryonic development Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0071244 cellular response to carbon dioxide Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:2000030 regulation of response to red or far red light Biological Process
KEGG gene cross-reference
ath:AT1G62400
ath:AT2G17700
ath:AT2G24360
ath:AT4G35780
ath:AT4G38470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.630
Rank 1 · TkA07G025300 · TK1151
Nucleus0.281
Rank 2 · TkA07G025300 · TK1151
Cell membrane0.279
Rank 3 · TkA07G025300 · TK1151
Golgi apparatus0.080
Rank 4 · TkA07G025300 · TK1151
Mitochondrion0.058
Rank 5 · TkA07G025300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17667Pkinase_fungal21-108 aa
PF03109ABC143-74 aa
PF07714PK_Tyr_Ser-Thr47-298 aa
PF01636APH50-80 aa
PF13095FTA251-81 aa
PF00069Pkinase52-296 aa
PF01163RIO175-192 aa
PF03109ABC189-194 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G025300PF17667Pkinase_fungal211081.4e-0628.0
TkA07G025300PF03109ABC143740.004916.8
TkA07G025300PF07714PK_Tyr_Ser-Thr472988.2e-68229.2
TkA07G025300PF01636APH50800.004517.5
TkA07G025300PF13095FTA251810.001918.7
TkA07G025300PF00069Pkinase522961.2e-57196.1
TkA07G025300PF01163RIO1751920.0001921.8
TkA07G025300PF03109ABC1891940.004916.8
TkA07G025300PF13095FTA21111770.001918.7
TkA07G025300PF06293Kdo1301960.06713.3
TkA07G025300PF14531Kinase-like1402498.4e-0626.0
TkA07G025300PF17667Pkinase_fungal1552341.4e-0628.0
TkA07G025300PF01636APH1631940.004517.5
TkA07G025300PF01636APH2412890.004517.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q2MHE4Arabidopsis thalianasp|Q2MHE4|HT1_ARATH Serine/threonine/tyrosine-protein kinase HT185.000%Swiss-ProtHigh
Q9ZQ31Arabidopsis thalianasp|Q9ZQ31|STY13_ARATH Serine/threonine-protein kinase STY1349.100%Swiss-ProtMedium
F4JTP5Arabidopsis thalianasp|F4JTP5|STY46_ARATH Serine/threonine-protein kinase STY4643.200%Swiss-ProtMedium
Q8RWL6Arabidopsis thalianasp|Q8RWL6|STY17_ARATH Serine/threonine-protein kinase STY1739.600%Swiss-ProtMedium
O22558Arabidopsis thalianasp|O22558|STY8_ARATH Serine/threonine-protein kinase STY839.200%Swiss-ProtMedium

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