TkA06G447020 | RubberDandelionOmics

Gene overview

TkA06G447020

Reference: TK1151 Chr: Chr06 Coordinates: 110446064-110447428 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1077 bp · TkA06G447020|TK1151|cDNA

ATGGGTCACCTCATTCCGATGGCTGAATTTGCTAAGCGACTTGTCAAACACCACCCTATTTCGGTCACCATCATCATTCCTACAACCGGAAGTCCTCCCAAAGCTCAATTATCCGTCCTTGAATCATTGCCTGAAAACATACACCATTTGTTTCTTTCTTCGGTAAATATGGATCGCTTACCAAAGGGTGCCCGTCCCGAGATTGTAATTTCCTTCATCATGCAAGCTAGTCTTTCAAGTCTCCGAGATGCGTTGACTTC...

CDS

Download CDS FASTA

1077 bp · TkA06G447020|TK1151|CDS

ATGGGTCACCTCATTCCGATGGCTGAATTTGCTAAGCGACTTGTCAAACACCACCCTATTTCGGTCACCATCATCATTCCTACAACCGGAAGTCCTCCCAAAGCTCAATTATCCGTCCTTGAATCATTGCCTGAAAACATACACCATTTGTTTCTTTCTTCGGTAAATATGGATCGCTTACCAAAGGGTGCCCGTCCCGAGATTGTAATTTCCTTCATCATGCAAGCTAGTCTTTCAAGTCTCCGAGATGCGTTGACTTC...

Protein

Download Protein FASTA

358 aa · TkA06G447020|TK1151|PROTEIN

MGHLIPMAEFAKRLVKHHPISVTIIIPTTGSPPKAQLSVLESLPENIHHLFLSSVNMDRLPKGARPEIVISFIMQASLSSLRDALTSLKSRNNLVALVFDMFGHDSMEVAKEFNLFKFLFFPMSAMALSFTFMLPKLDEETSYRHDCIKWLDNQPDGSVVLVSFGSGGTLSLDQIHELALGLEMSGHKFLWIVRSPDKVSNASFFSGSSQTDPLGFLPEGFRSRTVKQGLIVPSWAPQIEILSHKATGGFLTHCGWNSTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G447020`
TK1151 ID	TkA06G447020
OH-1004 ID	LXL04_022781
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.700
Protein coverage (%)	TK1151 100.000 / OH-1004 96.375 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G447020

Location Chr06:110446064-110447428 (-)

Description Similar to AS: Hydroquinone glucosyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g01070`	Bifunctional O-glycosyltransferase and N-glycosyltransferase that can detoxify xenobiotics.	Functional importance of the family 1 glucosyltransferase UGT72B1 in the metabolism of xenobiotics in Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2005.02398.x Characterization and engineering of the bifunctional N- and O-glucosyltransferase involved in xenobiotic metabolism in plants.2007 · DOI: 10.1073/pnas.0706421104
`At1g01390`	UDP-glycosyltransferase 72B2.	No verified direct reference in this release
`At1g01420`	Possesses low quercetin 3-O-glucosyltransferase activity in vitro.	No verified direct reference in this release
`At4g36770`	UDP-glycosyltransferase 72C1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022781 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006805 xenobiotic metabolic process Biological Process

GO:0009636 response to toxic substance Biological Process

GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0042178 xenobiotic catabolic process Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0047213 anthocyanidin 3-O-glucosyltransferase activity Molecular Function

GO:0050505 hydroquinone glucosyltransferase activity Molecular Function

GO:0080043 quercetin 3-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ag:CAC35167

ath:AT1G01390

ath:AT1G01420

ath:AT4G01070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.787

Rank 1 · TkA06G447020 · TK1151

Nucleus0.241

Rank 2 · TkA06G447020 · TK1151

Endoplasmic reticulum0.066

Rank 3 · TkA06G447020 · TK1151

Peroxisome0.064

Rank 4 · TkA06G447020 · TK1151

Plastid0.048

Rank 5 · TkA06G447020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201UDPGT150-323 aa

PF06722EryCIII-like_C235-330 aa

PF04101Glyco_tran_28_C251-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G447020	`PF00201`	UDPGT	150	323	1.2e-23	84.4
TkA06G447020	`PF06722`	EryCIII-like_C	235	330	0.0019	18.9
TkA06G447020	`PF04101`	Glyco_tran_28_C	251	319	0.14	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M156`	Arabidopsis thaliana	sp\|Q9M156\|U72B1_ARATH UDP-glycosyltransferase 72B1	40.800%	Swiss-Prot	Medium
`Q8W4C2`	Arabidopsis thaliana	sp\|Q8W4C2\|U72B2_ARATH UDP-glycosyltransferase 72B2	54.700%	Swiss-Prot	Medium
`Q9LNI1`	Arabidopsis thaliana	sp\|Q9LNI1\|U72B3_ARATH UDP-glycosyltransferase 72B3	52.400%	Swiss-Prot	Medium
`O23205`	Arabidopsis thaliana	sp\|O23205\|U72C1_ARATH UDP-glycosyltransferase 72C1	54.200%	Swiss-Prot	Medium

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