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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G272350
Reference: TK1151 Chr: Chr06 Coordinates: 69061056-69064591 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1572 bp · TkA06G272350|TK1151|cDNA

ATGAGAGGCTGCCGTCTGTTGGTTTTCTTGTATCCACCTTCTCCGGCGACTCTGTATGTCCCATATTCATTCACAAATTCAACTTCACAGTGTACAATGAGACTTGCAGACGAGGAAAATGAAAATGATGATATTCGACAATTTGATGTAGATAAAAACAAAGACATTGATTTACAGTCAGTGGGTCATCGGGAGGTGCACGAAGAATACTCTATAGTTGTGGAAGATGAAGACTTACATGCAAGAGATTTTCTTAATCC...

CDS

Download CDS FASTA

1572 bp · TkA06G272350|TK1151|CDS

ATGAGAGGCTGCCGTCTGTTGGTTTTCTTGTATCCACCTTCTCCGGCGACTCTGTATGTCCCATATTCATTCACAAATTCAACTTCACAGTGTACAATGAGACTTGCAGACGAGGAAAATGAAAATGATGATATTCGACAATTTGATGTAGATAAAAACAAAGACATTGATTTACAGTCAGTGGGTCATCGGGAGGTGCACGAAGAATACTCTATAGTTGTGGAAGATGAAGACTTACATGCAAGAGATTTTCTTAATCC...

Protein

Download Protein FASTA

523 aa · TkA06G272350|TK1151|PROTEIN

MRGCRLLVFLYPPSPATLYVPYSFTNSTSQCTMRLADEENENDDIRQFDVDKNKDIDLQSVGHREVHEEYSIVVEDEDLHARDFLNPDQKFAFDEIMRHVEENIPGVFFIDGSGGTGKTFLYKALLANIRSRGLIALATATSGVAANNMSGGRTAHSRFKIPLNLDNNSMCNIKKQSGTAQLLRDAKVIIWDEASMAKRQAVEALDRTMQDITDTNLLFGGKIMVMGGDFRQVLPVVKRGTRAQIVDSSLRMSPLWSSIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G272350
TK1151 IDTkA06G272350
OH-1004 IDLXL04_023572
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 94.264 / OH-1004 68.188
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G272350
LocationChr06:69061056-69064591 (+)
DescriptionSimilar to pif1: ATP-dependent DNA helicase PIF1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023572 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000722 telomere maintenance via recombination Biological Process
GO:0000723 telomere maintenance Biological Process
GO:0000727 double-strand break repair via break-induced replication Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0019985 translesion synthesis Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0071932 replication fork reversal Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
bba:Bd3546
cal:CAALFM_CR07360WA
rno:367645
xla:734585
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.634
Rank 1 · TkA06G272350 · TK1151
Cytoplasm0.379
Rank 2 · TkA06G272350 · TK1151
Mitochondrion0.047
Rank 3 · TkA06G272350 · TK1151
Peroxisome0.028
Rank 4 · TkA06G272350 · TK1151
Cell membrane0.022
Rank 5 · TkA06G272350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05970PIF185-290 aa
PF13604AAA_3085-246 aa
PF04851ResIII85-132 aa
PF19995iSTAND89-208 aa
PF10923BrxC_BrxD96-139 aa
PF13191AAA_1697-138 aa
PF02689Herpes_Helicase104-151 aa
PF13401AAA_22106-215 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G272350PF05970PIF1852906.2e-72242.5
TkA06G272350PF13604AAA_30852469.9e-0935.9
TkA06G272350PF04851ResIII851320.2611.9
TkA06G272350PF19995iSTAND892080.1912.9
TkA06G272350PF10923BrxC_BrxD961390.211.3
TkA06G272350PF13191AAA_16971380.09114.0
TkA06G272350PF02689Herpes_Helicase1041515.3e-0625.5
TkA06G272350PF13401AAA_221062150.006117.6
TkA06G272350PF13245AAA_191072351.1e-0526.4
TkA06G272350PF09848SLFN-g3_helicase1073134.9e-0523.5
TkA06G272350PF10412TrwB_AAD_bind1081420.1611.5
TkA06G272350PF01443Viral_helicase11091440.001519.1
TkA06G272350PF04851ResIII1791970.2611.9
TkA06G272350PF13401AAA_223103590.006117.6
TkA06G272350PF19995iSTAND3103540.1912.9
TkA06G272350PF21530Pif1_2B_dom3824042.2e-0524.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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