TkA06G240390 | RubberDandelionOmics

Gene overview

TkA06G240390

Reference: TK1151 Chr: Chr06 Coordinates: 61570416-61577170 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2720 bp · TkA06G240390|TK1151|cDNA

CCAAACATCTACAAAGAATTTTTAAAAACGGAAGAGCTTCCGACAGCTGGACGGTATTTCGCCATTTTCATATGCTCCCACTCGCGCCCCTCTTCTCCCTTTACCGCTCTCCCATTTCACCCACTTGTCAAAACCCTAATCTCCATCTTCTCACTGATACCATCAGTACAATCATGTCGATTGCATTTTGACTCGATCGCGTACACATTTCCGATTACCCTTTCGATTATTCCTTAATATTCGTCACTCTTCTCAGGTTT...

CDS

Download CDS FASTA

2079 bp · TkA06G240390|TK1151|CDS

ATGGTGATTCACTCCGTCAAAGCCGAGAAAAATGAAGCCGCTGCTGAGAATGGACCTACAGTCCAACATTGCGGGGGAGTTGACACTCAAGTTACCCATACCTGCTCTCCGGTTAGGAGGATAAGTGCTCGTATTCAGAAGAGCGAGAAAGAAAAAGCTGCTATTCGACTTCGTCAACAGGAAGAGGAGTCTATCACTAAGGTAGAGAAACCGGCGAAGAAGCAGCGATTAAACTACAACAAGAAAAAGGGTATATCGGA...

Protein

Download Protein FASTA

692 aa · TkA06G240390|TK1151|PROTEIN

MVIHSVKAEKNEAAAENGPTVQHCGGVDTQVTHTCSPVRRISARIQKSEKEKAAIRLRQQEEESITKVEKPAKKQRLNYNKKKGISDNVRTQVVHDEGKLTVVASNSEAGTEHKEKLKDEQTGEEIENGSTCKGQIGEKSVYAMVTDTIRAFNKHYLHFVQEEETRCKKVEADQKKTKKPKSKNQDAVEEKGKAKRPDLKALTKMINLNTTLIPPTRIGSVPGVDVGHQFFSRCEMVTVGFHNHWLCGIDYIGIGRKKDY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G240390`
TK1151 ID	TkA06G240390
OH-1004 ID	LXL04_023697
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G240390

Location Chr06:61570416-61577170 (-)

Description Similar to SUVH4: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13960`	Histone methyltransferase.	H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases.2005 · DOI: 10.1128/mcb.25.23.10507-10515.2005
`At2g22740`	Histone methyltransferase.	Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana.2004 · DOI: 10.1007/s00412-004-0275-7 H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases.2005 · DOI: 10.1128/mcb.25.23.10507-10515.2005
`At2g35160`	Histone methyltransferase.	No verified direct reference in this release
`At1g73100`	Histone methyltransferase.	No verified direct reference in this release
`At5g04940`	Histone methyltransferase.	Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.2005 · DOI: 10.1038/sj.emboj.7600604

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023697 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0018022 peptidyl-lysine methylation Biological Process

GO:0031048 regulatory ncRNA-mediated heterochromatin formation Biological Process

GO:0032259 methylation Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0044027 negative regulation of gene expression via chromosomal CpG island methylation Biological Process

GO:0000123 histone acetyltransferase complex Cellular Component

GO:0000775 chromosome, centromeric region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific Molecular Function

GO:0003690 double-stranded DNA binding Molecular Function

GO:0008168 methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G73100

ath:AT2G22740

ath:AT2G35160

ath:AT5G04940

ath:AT5G13960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.947

Rank 1 · TkA06G240390 · TK1151

Cytoplasm0.085

Rank 2 · TkA06G240390 · TK1151

Cell membrane0.029

Rank 3 · TkA06G240390 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA06G240390 · TK1151

Mitochondrion0.013

Rank 5 · TkA06G240390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03473MOSC18-61 aa

PF02182SAD_SRA44-61 aa

PF05033Pre-SET65-82 aa

PF00856SET78-78 aa

PF03473MOSC160-189 aa

PF02182SAD_SRA217-376 aa

PF05033Pre-SET409-507 aa

PF00856SET526-662 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G240390	`PF03473`	MOSC	18	61	0.2	12.4
TkA06G240390	`PF02182`	SAD_SRA	44	61	7.7e-49	166.0
TkA06G240390	`PF05033`	Pre-SET	65	82	3.2e-19	70.1
TkA06G240390	`PF00856`	SET	78	78	1.4e-18	68.0
TkA06G240390	`PF03473`	MOSC	160	189	0.2	12.4
TkA06G240390	`PF02182`	SAD_SRA	217	376	7.7e-49	166.0
TkA06G240390	`PF05033`	Pre-SET	409	507	3.2e-19	70.1
TkA06G240390	`PF00856`	SET	526	662	1.4e-18	68.0
TkA06G240390	`PF05033`	Pre-SET	679	690	3.2e-19	70.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GZB6`	Arabidopsis thaliana	sp\|Q8GZB6\|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4	61.900%	Swiss-Prot	High
`Q8VZ17`	Arabidopsis thaliana	sp\|Q8VZ17\|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6	39.700%	Swiss-Prot	Medium
`O82175`	Arabidopsis thaliana	sp\|O82175\|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5	37.600%	Swiss-Prot	Medium
`Q9C5P4`	Arabidopsis thaliana	sp\|Q9C5P4\|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3	39.200%	Swiss-Prot	Medium
`Q9FF80`	Arabidopsis thaliana	sp\|Q9FF80\|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1	37.600%	Swiss-Prot	Medium

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