TkA06G195520 | RubberDandelionOmics

Gene overview

TkA06G195520

Reference: TK1151 Chr: Chr06 Coordinates: 50926369-50936193 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

840 bp · TkA06G195520|TK1151|cDNA

ATGGAAACCATTCTTGCAAGATTAAACGGTGGCATACTGGTAAATATACACAATGTCAAATCCATCATCATGTTTCGTGGCAGAAATTACAGACAACCAAAGAATCTGATACCTATCAACACCTTTACAAAAAGAAAGGCATTATTCAAAGCAAGATTTGAACAAGCACTAGATTCTCAAAAACTAAACATAAAGAAAATCGAACAGCAACTTAGAAGAATGAACGTTAACCCTGATGATCTAGTAGCAATGGCCAGCAT...

CDS

Download CDS FASTA

840 bp · TkA06G195520|TK1151|CDS

ATGGAAACCATTCTTGCAAGATTAAACGGTGGCATACTGGTAAATATACACAATGTCAAATCCATCATCATGTTTCGTGGCAGAAATTACAGACAACCAAAGAATCTGATACCTATCAACACCTTTACAAAAAGAAAGGCATTATTCAAAGCAAGATTTGAACAAGCACTAGATTCTCAAAAACTAAACATAAAGAAAATCGAACAGCAACTTAGAAGAATGAACGTTAACCCTGATGATCTAGTAGCAATGGCCAGCAT...

Protein

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279 aa · TkA06G195520|TK1151|PROTEIN

METILARLNGGILVNIHNVKSIIMFRGRNYRQPKNLIPINTFTKRKALFKARFEQALDSQKLNIKKIEQQLRRMNVNPDDLVAMASIQRVASTFFNAIDKKEGSPYVFHGDKDDKHRVAVIKEEEEDSDQEELDKFIVEIEDAANKEWEVEEAAEKEEVNRIRYLYKEDYDGRYTKPGMGRQALGPQRGRDSQDDDKNDENTPGYVYKAPKLERWNGGRNGRFKGREGVEEESCSEDVLDELENVMFESDEENTNLYLKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G195520`
TK1151 ID	TkA06G195520
OH-1004 ID	LXL04_033441
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	41.800
Protein coverage (%)	TK1151 19.713 / OH-1004 15.537 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G195520

Location Chr06:50926369-50936193 (+)

Description Similar to At3g25440: Uncharacterized CRM domain-containing protein At3g25440, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27550`	Involved in the splicing of group II introns in mitochondria.	CFM9, a Mitochondrial CRM Protein, Is Crucial for Mitochondrial Intron Splicing, Mitochondria Function and Arabidopsis Growth and Stress Responses.2019 · DOI: 10.1093/pcp/pcz147
`At3g25440`	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033441 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000373 Group II intron splicing Biological Process

GO:0006397 mRNA processing Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0048316 seed development Biological Process

GO:0140040 mitochondrial polycistronic RNA processing Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G23070

ath:AT3G25440

ath:AT3G27550

dosa:Os11g0592400

zma:100126360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.662

Rank 1 · TkA06G195520 · TK1151

Cytoplasm0.315

Rank 2 · TkA06G195520 · TK1151

Mitochondrion0.061

Rank 3 · TkA06G195520 · TK1151

Cell membrane0.039

Rank 4 · TkA06G195520 · TK1151

Endoplasmic reticulum0.028

Rank 5 · TkA06G195520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00707IF3_C17-33 aa

PF25094R3H_PUS7L91-120 aa

PF00707IF3_C127-149 aa

PF00707IF3_C222-244 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G195520	`PF00707`	IF3_C	17	33	0.5	11.0
TkA06G195520	`PF25094`	R3H_PUS7L	91	120	0.14	13.1
TkA06G195520	`PF00707`	IF3_C	127	149	0.5	11.0
TkA06G195520	`PF00707`	IF3_C	222	244	0.5	11.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LT57`	Arabidopsis thaliana	sp\|Q9LT57\|CFM9_ARATH CRM-domain containing factor CFM9, mitochondrial	71.700%	Swiss-Prot	Medium
`Q67XL4`	Arabidopsis thaliana	sp\|Q67XL4\|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic	39.000%	Swiss-Prot	Low

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