TkA06G154050 | RubberDandelionOmics

Gene overview

TkA06G154050

Reference: TK1151 Chr: Chr06 Coordinates: 40282123-40287389 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2349 bp · TkA06G154050|TK1151|cDNA

CTCTCTCTCTACCTCTCTCTCTCTCTCTTCTCTCTCTCTAAAATCAATATATTAATATATGTATATATACATATAGTGTGTAAATGAGAAGATTACAAGTAGCATAGATATATTTCAAATTGGGTAAAGTAGTACAATTCAAACAAAGAGAAAACGGGTTCACAAGAACACAAAGAGAAACACACATATACATACAGAGACCTATATGTATAGGTAGAGAGAGAGAAAGGAAAGGAGGGAGATGGATTTGCTGCTTTCGG...

CDS

Download CDS FASTA

1452 bp · TkA06G154050|TK1151|CDS

ATGTGGGATCTAAACGGCTTTCCTGATCGGAGGGGACGCTCGTCACCGGTGGAAGGGGACGAAGAAGATGCTAATAATCATGATTATAAGGGTAAAGGGGTGGGGTCAATATCGAATTCAAGTTCCTCCGCCGTTGTTATGGAGGAAGACGGAGGCTCCGATGAGGAGGAATCGGAGAGAGCGAGTCCAAGGAAACGAAGCAGTACAGGTGATGGAAGGTTGTTTGGCTTTTCTATGACGGAAAACGATCCTCCAGTGAC...

Protein

Download Protein FASTA

483 aa · TkA06G154050|TK1151|PROTEIN

MWDLNGFPDRRGRSSPVEGDEEDANNHDYKGKGVGSISNSSSSAVVMEEDGGSDEEESERASPRKRSSTGDGRLFGFSMTENDPPVTRQFFPVDDSEGGPTTSGGVGGGLISPATTFPTAHWFGVKFCHQSSDPLAGVTATADGFVGKAAAAVVPQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGMEADINFNLEDYDDDVKQMSNLTKEEFVHVLRRQSTGFPRG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G154050`
TK1151 ID	TkA06G154050
OH-1004 ID	LXL04_024350
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 97.576 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G154050

Location Chr06:40282123-40287389 (+)

Description Similar to AP2: Floral homeotic protein APETALA 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36920`	Probable transcriptional activator that promotes early floral meristem identity.	No verified direct reference in this release
`At5g67180`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8AVJ9`	Transcription factor.	No verified direct reference in this release
`Os04g0649100`	Transcription factor.	Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.2012 · DOI: 10.1105/tpc.111.094383
`UniProt: B8AXC3`	Probable transcription factor (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024350 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009409 response to cold Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010073 meristem maintenance Biological Process

GO:0010093 specification of floral organ identity Biological Process

GO:0030154 cell differentiation Biological Process

GO:0048316 seed development Biological Process

GO:0048460 flower formation Biological Process

GO:0048481 plant ovule development Biological Process

KEGG gene cross-reference

ath:AT4G36920

ath:AT5G67180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973

Rank 1 · TkA06G154050 · TK1151

Cytoplasm0.066

Rank 2 · TkA06G154050 · TK1151

Cell membrane0.025

Rank 3 · TkA06G154050 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA06G154050 · TK1151

Plastid0.015

Rank 5 · TkA06G154050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP2171-220 aa

PF00847AP2262-312 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G154050	`PF00847`	AP2	171	220	5.2e-21	75.4
TkA06G154050	`PF00847`	AP2	262	312	5.2e-21	75.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P47927`	Arabidopsis thaliana	sp\|P47927\|AP2_ARATH Floral homeotic protein APETALA 2	63.900%	Swiss-Prot	High
`Q9FH95`	Arabidopsis thaliana	sp\|Q9FH95\|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3	65.600%	Swiss-Prot	Medium
`B8AVJ9`	Oryza sativa subsp. indica	sp\|B8AVJ9\|APL25_ORYSI APETALA2-like protein 5	79.500%	Swiss-Prot	Low
`A0A0N7KJT8`	Oryza sativa subsp. japonica	sp\|A0A0N7KJT8\|APL25_ORYSJ APETALA2-like protein 5	79.500%	Swiss-Prot	Low
`B8AXC3`	Oryza sativa subsp. indica	sp\|B8AXC3\|AP21_ORYSI APETALA2-like protein 1	88.800%	Swiss-Prot	Low

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