TkA06G132310 | RubberDandelionOmics

Gene overview

TkA06G132310

Reference: TK1151 Chr: Chr06 Coordinates: 34594539-34597270 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2272 bp · TkA06G132310|TK1151|cDNA

TAATAAATCAATCCCCAATTCCTCACTTCCATAGCACACTGGTCGGAAATTCAAGAAAAAATGCCTACAACTTCCTTTTCAATTCGTATTCTACTATCTGCATACTTTCTTACAACTCTCTGCTTCTTCTCCCCTAACCCAGCAACAGCTTTGCACGTTGGGGAAGCGGAGGAAGAAGGTGGCGGTCCTCCGGTACCGGTGCCCGCAAGGCATGGAGCAGTGGTGAAGAAAGATAAGAGATGGAGTGTGGTTACGACGGA...

CDS

Download CDS FASTA

2124 bp · TkA06G132310|TK1151|CDS

ATGCCTACAACTTCCTTTTCAATTCGTATTCTACTATCTGCATACTTTCTTACAACTCTCTGCTTCTTCTCCCCTAACCCAGCAACAGCTTTGCACGTTGGGGAAGCGGAGGAAGAAGGTGGCGGTCCTCCGGTACCGGTGCCCGCAAGGCATGGAGCAGTGGTGAAGAAAGATAAGAGATGGAGTGTGGTTACGACGGAGTTCGGTGAGATCTCAGCCGTTAAAGTGGGAGATGGTAAAGATGGATTCTACCATCTCCA...

Protein

Download Protein FASTA

707 aa · TkA06G132310|TK1151|PROTEIN

MPTTSFSIRILLSAYFLTTLCFFSPNPATALHVGEAEEEGGGPPVPVPARHGAVVKKDKRWSVVTTEFGEISAVKVGDGKDGFYHLQFITMEPNSLFLPVHLHSDMVFYVDSGSGTLYWVDLEKDDDKLRQVELQAGDVYRLPTESFFYLQSNLDPDRRKLRINAIFSDSKGEIREGSSFGAYASVRDLILGFDNRVLQAALNVDEEVIEELRSGGKQAMIVHGVSKAKMTELWEVQYRIVTAFLGRMKNNNMIDVSNKN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G132310`
TK1151 ID	TkA06G132310
OH-1004 ID	LXL04_024543
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.900
Protein coverage (%)	TK1151 63.791 / OH-1004 59.973 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G132310

Location Chr06:34594539-34597270 (-)

Description Similar to At2g18540: Vicilin-like seed storage protein At2g18540

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g18540`	Seed storage protein.	No verified direct reference in this release
`At4g36700`	Seed storage protein.	No verified direct reference in this release
`At2g28490`	Seed storage protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024543 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010431 seed maturation Biological Process

GO:0031640 killing of cells of another organism Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0048316 seed development Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0070207 protein homotrimerization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0019863 IgE binding Molecular Function

GO:0045735 nutrient reservoir activity Molecular Function

KEGG gene cross-reference

ath:AT2G18540

ath:AT2G28490

ath:AT4G36700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.309

Rank 1 · TkA06G132310 · TK1151

Endoplasmic reticulum0.234

Rank 2 · TkA06G132310 · TK1151

Cell membrane0.195

Rank 3 · TkA06G132310 · TK1151

Extracellular0.164

Rank 4 · TkA06G132310 · TK1151

Cytoplasm0.144

Rank 5 · TkA06G132310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01140Gag_MA49-110 aa

PF00190Cupin_187-208 aa

PF07883Cupin_288-144 aa

PF24204DUF7428247-260 aa

PF00190Cupin_1266-418 aa

PF07883Cupin_2302-362 aa

PF24204DUF7428413-433 aa

PF27837Fyv8440-655 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G132310	`PF01140`	Gag_MA	49	110	0.35	11.5
TkA06G132310	`PF00190`	Cupin_1	87	208	2.6e-41	141.4
TkA06G132310	`PF07883`	Cupin_2	88	144	1.7e-09	37.9
TkA06G132310	`PF24204`	DUF7428	247	260	0.048	14.2
TkA06G132310	`PF00190`	Cupin_1	266	418	2.6e-41	141.4
TkA06G132310	`PF07883`	Cupin_2	302	362	1.7e-09	37.9
TkA06G132310	`PF24204`	DUF7428	413	433	0.048	14.2
TkA06G132310	`PF27837`	Fyv8	440	655	8.8	5.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IQK5`	Arabidopsis thaliana	sp\|F4IQK5\|VCL21_ARATH Vicilin-like seed storage protein At2g18540	49.900%	Swiss-Prot	Medium
`F4JQG6`	Arabidopsis thaliana	sp\|F4JQG6\|VCL43_ARATH Vicilin-like seed storage protein At4g36700	45.800%	Swiss-Prot	Medium
`Q9SK09`	Arabidopsis thaliana	sp\|Q9SK09\|VCL22_ARATH Vicilin-like seed storage protein At2g28490	30.100%	Swiss-Prot	Medium

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