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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G072910
Reference: TK1151 Chr: Chr06 Coordinates: 19537742-19553031 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4602 bp · TkA06G072910|TK1151|cDNA

AAATAATTATGTTCCGTGTAGACTAAAAATTCGAAACGATGCCGTAAGAACCAACAACACCATCCCGGAACAGAGCTGTTATGTTCATACAAACCGTACATGACAACCTAATCTCCGTCCCGCCATGAACACACTCGCTTCTTCTTCTTCCTCCTCCTTTATCCTCTCACCATTTTCCCTTCTAAACCCTACACTAGAAATCTCTCGATACGCTCTTCATCATTACTTCAAATTCACGATTCACTCCAGAAAGACCCTCC...

CDS

Download CDS FASTA

3513 bp · TkA06G072910|TK1151|CDS

ATGAACACACTCGCTTCTTCTTCTTCCTCCTCCTTTATCCTCTCACCATTTTCCCTTCTAAACCCTACACTAGAAATCTCTCGATACGCTCTTCATCATTACTTCAAATTCACGATTCACTCCAGAAAGACCCTCCCTTTCTGTTTTCACAGCTCCATTCAAAATCGCCAGCAAAAAACACACCAATTTCGAAGTAATTATAAGTTCCCGAAGTCAGATTTTTCAGTAGGGGAGTCTCAGGCGTCGGAGGATACCGACGA...

Protein

Download Protein FASTA

1170 aa · TkA06G072910|TK1151|PROTEIN

MNTLASSSSSSFILSPFSLLNPTLEISRYALHHYFKFTIHSRKTLPFCFHSSIQNRQQKTHQFRSNYKFPKSDFSVGESQASEDTDEDDDDDEEAAEEYDVVAEFGQELEEDDEDEVESDEINDLEVDVNKSKFEEFKWQRIERIRNDVREYGDGILDVDELASVYNFRIDKFQRLAIQAFLRGSSVVVSAPTSAGKTLIAEAAAVAAVARGRRLFYTTPLKALSNQKFREFCDAFGEDNVGLLTGDSAINRDAQVLIMT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G072910
TK1151 IDTkA06G072910
OH-1004 IDLXL04_025234
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.100
Protein coverage (%)TK1151 93.419 / OH-1004 49.799
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G072910
LocationChr06:19537742-19553031 (-)
DescriptionSimilar to ISE2: DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g70070 RNA helicase involved in group II intron splicing.
Identification of a developmental transition in plasmodesmatal function during embryogenesis in Arabidopsis thaliana.2002 · DOI: 10.1242/dev.129.5.1261
INCREASED SIZE EXCLUSION LIMIT 2 encodes a putative DEVH box RNA helicase involved in plasmodesmata function during Arabidopsis embryogenesis.2007 · DOI: 10.1105/tpc.106.045666
Loss of INCREASED SIZE EXCLUSION LIMIT (ISE)1 or ISE2 increases the formation of secondary plasmodesmata.2010 · DOI: 10.1016/j.cub.2010.03.064
The chloroplastic DEVH-box RNA helicase INCREASED SIZE EXCLUSION LIMIT 2 involved in plasmodesmata regulation is required for group II intron splicing.2016 · DOI: 10.1111/pce.12603

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025234 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000373 Group II intron splicing Biological Process
GO:0000712 resolution of meiotic recombination intermediates Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006397 mRNA processing Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010497 plasmodesmata-mediated intercellular transport Biological Process
GO:0016441 post-transcriptional gene silencing Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT1G24190
ath:AT1G70060
ath:AT1G70070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.759
Rank 1 · TkA06G072910 · TK1151
Mitochondrion0.241
Rank 2 · TkA06G072910 · TK1151
Nucleus0.053
Rank 3 · TkA06G072910 · TK1151
Cytoplasm0.045
Rank 4 · TkA06G072910 · TK1151
Peroxisome0.015
Rank 5 · TkA06G072910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00270DEAD172-328 aa
PF04851ResIII173-324 aa
PF01695IstB_IS21174-220 aa
PF25199nSTAND_NTPase5182-235 aa
PF13401AAA_22185-308 aa
PF22527DEXQc_Suv3190-322 aa
PF01695IstB_IS21280-295 aa
PF00271Helicase_C512-573 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G072910PF00270DEAD1723288.8e-2794.6
TkA06G072910PF04851ResIII1733244.6e-0937.1
TkA06G072910PF01695IstB_IS211742200.003217.8
TkA06G072910PF25199nSTAND_NTPase51822350.2112.1
TkA06G072910PF13401AAA_221853080.0003321.7
TkA06G072910PF22527DEXQc_Suv31903221.1e-0732.3
TkA06G072910PF01695IstB_IS212802950.003217.8
TkA06G072910PF00271Helicase_C5125731.7e-0525.7
TkA06G072910PF29465Hydrophobin_like5886170.1613.0
TkA06G072910PF22527DEXQc_Suv36397111.1e-0732.3
TkA06G072910PF01695IstB_IS217087430.003217.8
TkA06G072910PF25446SH3_ISE27309123e-84281.9
TkA06G072910PF30547Ski2_cyano_M8108510.1113.1
TkA06G072910PF08148DSHCT9059351.6e-33116.6
TkA06G072910PF08148DSHCT100111651.6e-33116.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B9DFG3Arabidopsis thalianasp|B9DFG3|ISE2_ARATH DExH-box ATP-dependent RNA helicase DExH15 chloroplastic68.800%Swiss-ProtHigh

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