TkA06G039390 | RubberDandelionOmics

Gene overview

TkA06G039390

Reference: TK1151 Chr: Chr06 Coordinates: 10610820-10611643 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

600 bp · TkA06G039390|TK1151|cDNA

ATGGCAATTCTCCTGCAAATTACGGTTTTGCCCTCTTCAGAAAATAAGAACACGGAAGCTGAGTTGTGCTCATCTCACACTGAGTTGCAACACTTTTTAAATACTCCAACATCACAACCACCTGTTTTCATTGGTTTGAGTTCCATTGGAAGCATGGGGTTTATGAAAAACCCTCATTTGCTTCTTCAAGTTGTTAAAAGTGTTGTGGATGTAACAAATTACCGATTTGTCCTTTTCACCTCCGGATATGAACCTCTAGA...

CDS

Download CDS FASTA

600 bp · TkA06G039390|TK1151|CDS

ATGGCAATTCTCCTGCAAATTACGGTTTTGCCCTCTTCAGAAAATAAGAACACGGAAGCTGAGTTGTGCTCATCTCACACTGAGTTGCAACACTTTTTAAATACTCCAACATCACAACCACCTGTTTTCATTGGTTTGAGTTCCATTGGAAGCATGGGGTTTATGAAAAACCCTCATTTGCTTCTTCAAGTTGTTAAAAGTGTTGTGGATGTAACAAATTACCGATTTGTCCTTTTCACCTCCGGATATGAACCTCTAGA...

Protein

Download Protein FASTA

199 aa · TkA06G039390|TK1151|PROTEIN

MAILLQITVLPSSENKNTEAELCSSHTELQHFLNTPTSQPPVFIGLSSIGSMGFMKNPHLLLQVVKSVVDVTNYRFVLFTSGYEPLEDAATTKSSSSEFINDGISLFSGRLFCFSGSVPYKWLFHRTQSYVNARFKKVKYMSIIIFMLLMISINKMCIFLLLQMNLETRQIQGAIDNWHDNHYKEIGGWPNKAARLAYK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G039390`
TK1151 ID	TkA06G039390
OH-1004 ID	LXL04_038727
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.000
Protein coverage (%)	TK1151 63.819 / OH-1004 25.099 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G039390`
Location	Chr06:10610820-10611643 (+)
Description	Similar to UGT80B1: Sterol 3-beta-glucosyltransferase UGT80B1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038727` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005975 carbohydrate metabolic process Biological Process GO:0006914 autophagy Biological Process GO:0009813 flavonoid biosynthetic process Biological Process GO:0009845 seed germination Biological Process GO:0010214 seed coat development Biological Process GO:0015031 protein transport Biological Process GO:0016125 sterol metabolic process Biological Process GO:0016126 sterol biosynthetic process Biological Process GO:0048316 seed development Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference	ath:AT1G43620 ath:AT3G07020 dha:DEHA2E23738g ppa:PAS_chr4_0167 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.373

Rank 1 · TkA06G039390 · TK1151

Nucleus0.357

Rank 2 · TkA06G039390 · TK1151

Mitochondrion0.158

Rank 3 · TkA06G039390 · TK1151

Endoplasmic reticulum0.147

Rank 4 · TkA06G039390 · TK1151

Cell membrane0.090

Rank 5 · TkA06G039390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09323DUF19803-35 aa

PF09323DUF1980128-151 aa

PF30226PRM2130-175 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G039390	`PF09323`	DUF1980	3	35	0.098	13.8
TkA06G039390	`PF09323`	DUF1980	128	151	0.098	13.8
TkA06G039390	`PF30226`	PRM2	130	175	0.04	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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