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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G020650
Reference: TK1151 Chr: Chr06 Coordinates: 5633985-5640001 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3675 bp · TkA06G020650|TK1151|cDNA

GAAATTCATTCAAAATCAGACTTCGAAAACCCTCTTTAAACTTGCTGGTTTACTTGAGCCGTCACGTTAATGGAAGCCTCAACGTCGGTGGTTAGATCATGGAGGACGGCCTTTTTGACCTTGAGGGACGAAGTGCAGAACTCTCCAACCGACCCTACTATCCTCCACCTCCTTAACCGTCTCATTTTCTCCCAATCTGAAGCCCTGATTGCCGCTATCCCCAATCTCCCTATCCATGAGGTCACCTCAGACGCCATGTT...

CDS

Download CDS FASTA

3423 bp · TkA06G020650|TK1151|CDS

ATGGAAGCCTCAACGTCGGTGGTTAGATCATGGAGGACGGCCTTTTTGACCTTGAGGGACGAAGTGCAGAACTCTCCAACCGACCCTACTATCCTCCACCTCCTTAACCGTCTCATTTTCTCCCAATCTGAAGCCCTGATTGCCGCTATCCCCAATCTCCCTATCCATGAGGTCACCTCAGACGCCATGTTTCTCTTGGAATTGGTCGGGACCATATCCAATTCCAGAGGGGATGAAGCTATTCGTCATGTGCTGGTGCA...

Protein

Download Protein FASTA

1140 aa · TkA06G020650|TK1151|PROTEIN

MEASTSVVRSWRTAFLTLRDEVQNSPTDPTILHLLNRLIFSQSEALIAAIPNLPIHEVTSDAMFLLELVGTISNSRGDEAIRHVLVQLSNLIHNFSHFISFKVTSSTWSLVLHTYGGMLAMFLSTAGTKRDPSGNIVVIEATKHCLDTVRSLVDANQRTFTLSDNVQLLDFLLKTVTLSQNSPWEFQTTVLTMISEVFSRVGTSLPAHHWQSTVDTFRNILDVLGSKGPLMEGNVMDRFYTSLLNCLHLVLVNAKGSLQD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G020650
TK1151 IDTkA06G020650
OH-1004 IDLXL04_026222
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G020650
LocationChr06:5633985-5640001 (+)
DescriptionSimilar to HEATR6: HEAT repeat-containing protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026222 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
hsa:63897
pon:100173706
rno:497972
xla:379200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.478
Rank 1 · TkA06G020650 · TK1151
Cytoplasm0.443
Rank 2 · TkA06G020650 · TK1151
Golgi apparatus0.085
Rank 3 · TkA06G020650 · TK1151
Cell membrane0.067
Rank 4 · TkA06G020650 · TK1151
Lysosome / Vacuole0.055
Rank 5 · TkA06G020650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20412RALGAPB_N5-24 aa
PF20412RALGAPB_N93-124 aa
PF20412RALGAPB_N141-176 aa
PF02199SapA141-149 aa
PF23271HEAT_GCN1188-226 aa
PF20412RALGAPB_N188-255 aa
PF01602Adaptin_N352-376 aa
PF13251DUF4042355-534 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G020650PF20412RALGAPB_N5240.07113.8
TkA06G020650PF20412RALGAPB_N931240.07113.8
TkA06G020650PF20412RALGAPB_N1411760.07113.8
TkA06G020650PF02199SapA1411490.9810.2
TkA06G020650PF23271HEAT_GCN11882260.009716.7
TkA06G020650PF20412RALGAPB_N1882550.07113.8
TkA06G020650PF01602Adaptin_N3523760.02314.0
TkA06G020650PF13251DUF40423555345e-50170.4
TkA06G020650PF02985HEAT3553698.5e-1244.9
TkA06G020650PF05004IFRD3794280.001618.1
TkA06G020650PF02985HEAT3984238.5e-1244.9
TkA06G020650PF25780TPR_IPO55286010.2712.2
TkA06G020650PF01602Adaptin_N5476030.02314.0
TkA06G020650PF02199SapA7057150.9810.2
TkA06G020650PF01602Adaptin_N7119530.02314.0
TkA06G020650PF25780TPR_IPO57207840.2712.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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