TkA06G000930 | RubberDandelionOmics

Gene overview

TkA06G000930

Reference: TK1151 Chr: Chr06 Coordinates: 187203-190748 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1388 bp · TkA06G000930|TK1151|cDNA

TTCAGATCCCGGTTGTATGGTACAGCTCATAAACAAGTTCAAGAATAACTTCACGGAATCCCCAACACGAGGAGAGGGTACGACCTGTTTTTCCCGCAATCTGGGGTTCTGGATTCAAAAACCCTAATTTCTGCTAAGCGATGGCTTCATCACCATCACCCACCATCCCCATGCTCCTCGTCTTCGTCTTAACATGCTTCCCGACTTCATCTTTCTCCGTTCCTTTCATTGTACTTCACGGAATTGGGGATCAATGTTCA...

CDS

Download CDS FASTA

954 bp · TkA06G000930|TK1151|CDS

ATGGCTTCATCACCATCACCCACCATCCCCATGCTCCTCGTCTTCGTCTTAACATGCTTCCCGACTTCATCTTTCTCCGTTCCTTTCATTGTACTTCACGGAATTGGGGATCAATGTTCAAATAAAGGAATGACAAAGTTCACCCAGGAACTGAGCAACTTGTCCAAGTCTGAAGGATTTTGCATTGAAATTGGAGATGGAGCATGGGATTCCTGGTTTATGCCCCTATTAGAACAGACACAAATTGTTTGCGACAAGGT...

Protein

Download Protein FASTA

317 aa · TkA06G000930|TK1151|PROTEIN

MASSPSPTIPMLLVFVLTCFPTSSFSVPFIVLHGIGDQCSNKGMTKFTQELSNLSKSEGFCIEIGDGAWDSWFMPLLEQTQIVCDKVKKMKQLNNGYSILGLSQGNLIGRGVVEFCDGGPQVKNLISLGGPHAGTASVPLCGSGIFCMIADALIKSEVYSDYIQEHLAPSGYLKLPNNMDAYLQHCSFLPKLNNEIPEERNSTYKERLMSLQNLVLIMFEQDTVVIPKETAWFGYFPDGEFSPVLGPQQVYYYYYLHAFR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G000930`
TK1151 ID	TkA06G000930
OH-1004 ID	LXL04_026606
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G000930`
Location	Chr06:187203-190748 (+)
Description	Similar to ppt-1: Palmitoyl-protein thioesterase 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026606` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002084 protein depalmitoylation Biological Process GO:0006897 endocytosis Biological Process GO:0006898 receptor-mediated endocytosis Biological Process GO:0006907 pinocytosis Biological Process GO:0007005 mitochondrion organization Biological Process GO:0007042 lysosomal lumen acidification Biological Process GO:0009791 post-embryonic development Biological Process GO:0015031 protein transport Biological Process GO:0016042 lipid catabolic process Biological Process GO:0030149 sphingolipid catabolic process Biological Process GO:0030163 protein catabolic process Biological Process GO:0030308 negative regulation of cell growth Biological Process
KEGG gene cross-reference	bta:281421 cel:CELE_F44C4.5 ddi:DDB_G0292862 hsa:5538 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.645

Rank 1 · TkA06G000930 · TK1151

Extracellular0.157

Rank 2 · TkA06G000930 · TK1151

Cytoplasm0.146

Rank 3 · TkA06G000930 · TK1151

Endoplasmic reticulum0.120

Rank 4 · TkA06G000930 · TK1151

Golgi apparatus0.110

Rank 5 · TkA06G000930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02089Palm_thioest28-300 aa

PF05057DUF67681-136 aa

PF05057DUF676282-315 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G000930	`PF02089`	Palm_thioest	28	300	2.1e-74	251.2
TkA06G000930	`PF05057`	DUF676	81	136	0.036	14.3
TkA06G000930	`PF05057`	DUF676	282	315	0.036	14.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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