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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G034320
Reference: TK1151 Chr: Chr05 Coordinates: 9265255-9266580 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1326 bp · TkA05G034320|TK1151|cDNA

ATGCCACTAATTTTGTGTCGCCCATCAAAGCGACCAGTCGTTCTTCTCCTAACATCAACCATATCAACATCAGCATCAGCGTCAAAATGGATTTCCGCCATAAAAAATGCATCTTCACCCAGCAAATCTCTACAAATCTACACGCAAATGCACCGGCAGTCCATCCCCGTGGACAGCTTTGCCGTTCTCTACACACTCACATCATGTACCCATTTGCACAACCTCCCTCTTCTTTCTCACCTTCACGCCCATATTTCAAA...

CDS

Download CDS FASTA

1326 bp · TkA05G034320|TK1151|CDS

ATGCCACTAATTTTGTGTCGCCCATCAAAGCGACCAGTCGTTCTTCTCCTAACATCAACCATATCAACATCAGCATCAGCGTCAAAATGGATTTCCGCCATAAAAAATGCATCTTCACCCAGCAAATCTCTACAAATCTACACGCAAATGCACCGGCAGTCCATCCCCGTGGACAGCTTTGCCGTTCTCTACACACTCACATCATGTACCCATTTGCACAACCTCCCTCTTCTTTCTCACCTTCACGCCCATATTTCAAA...

Protein

Download Protein FASTA

441 aa · TkA05G034320|TK1151|PROTEIN

MPLILCRPSKRPVVLLLTSTISTSASASKWISAIKNASSPSKSLQIYTQMHRQSIPVDSFAVLYTLTSCTHLHNLPLLSHLHAHISKLGFSSNLYIMSSLLHGYSNASFDDAHVLFDEMPEKTIVTWNTMITGFSRSGNVTKARSMFDEMPTRNTASWSAMITSYINSGHQKQALALFHNMSINENLKPDHFTLSAILGLCGHMGTIGLISGKSIHGFIIRNKYDLNVELGTSLINTYAKSGFLKSASIIFNMMQYTNVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G034320
TK1151 IDTkA05G034320
OH-1004 IDLXL04_019255
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.900
Protein coverage (%)TK1151 94.331 / OH-1004 99.760
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G034320
LocationChr05:9265255-9266580 (-)
DescriptionSimilar to PCMP-H61: Pentatricopeptide repeat-containing protein At5g66520
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At1g33350 Pentatricopeptide repeat-containing protein At1g33350. No verified direct reference in this release
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release
At3g22690 Pentatricopeptide repeat-containing protein At3g22690. No verified direct reference in this release
At5g66520 Pentatricopeptide repeat-containing protein At5g66520. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019255 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G62890
ath:AT5G08305
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.662
Rank 1 · TkA05G034320 · TK1151
Plastid0.163
Rank 2 · TkA05G034320 · TK1151
Nucleus0.043
Rank 3 · TkA05G034320 · TK1151
Cytoplasm0.030
Rank 4 · TkA05G034320 · TK1151
Cell membrane0.005
Rank 5 · TkA05G034320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22120T6SS_Tse3_N23-44 aa
PF23276TPR_2425-75 aa
PF01535PPR38-53 aa
PF13041PPR_240-60 aa
PF29070MSC6_N41-178 aa
PF17177PPR_long42-150 aa
PF13812PPR_386-123 aa
PF13041PPR_295-122 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G034320PF22120T6SS_Tse3_N23440.02415.7
TkA05G034320PF23276TPR_2425753.5e-1143.9
TkA05G034320PF01535PPR38539.5e-40132.8
TkA05G034320PF13041PPR_240601.7e-42144.0
TkA05G034320PF29070MSC6_N411785.7e-0936.3
TkA05G034320PF17177PPR_long421502.4e-1247.4
TkA05G034320PF13812PPR_3861233.2e-2175.9
TkA05G034320PF13041PPR_2951221.7e-42144.0
TkA05G034320PF01535PPR1081229.5e-40132.8
TkA05G034320PF12854PPR_11091192.1e-2898.4
TkA05G034320PF22330Rib_mS39_PPR1101360.003317.9
TkA05G034320PF22120T6SS_Tse3_N1161680.02415.7
TkA05G034320PF13041PPR_21231541.7e-42144.0
TkA05G034320PF12854PPR_11231502.1e-2898.4
TkA05G034320PF13812PPR_31241503.2e-2175.9
TkA05G034320PF01535PPR1251539.5e-40132.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic26.200%Swiss-ProtLow
Q9C501Arabidopsis thalianasp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g3335034.000%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631028.300%Swiss-ProtLow
Q9LUJ2Arabidopsis thalianasp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g2269033.400%Swiss-ProtMedium
Q9FJY7Arabidopsis thalianasp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g6652034.900%Swiss-ProtMedium

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