TkA04G075160 | RubberDandelionOmics

Gene overview

TkA04G075160

Reference: TK1151 Chr: Chr04 Coordinates: 19830670-19832360 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

684 bp · TkA04G075160|TK1151|cDNA

ATGCCTCTTACTCCTGATTTCGATTTTCTGATCAGTACACAAACATCTCCTCCTCTCCCGATTTCGATTTTCTGGTATGGAGTAATAGGCGACGGCGATATCTTCACATCCTTCACTGATTTTACGGACCGGATTTTTAGAGAGGATTGTAAAACTGTGGACGTTAAAGGTTCTCATTCAGAGCACTTGGGAGATGAGATTCTCAACTTGAGGAATACATTGTTGCAGAGTGAACTGGAGAGGGAGAGAATAGCATTGGA...

CDS

Download CDS FASTA

684 bp · TkA04G075160|TK1151|CDS

ATGCCTCTTACTCCTGATTTCGATTTTCTGATCAGTACACAAACATCTCCTCCTCTCCCGATTTCGATTTTCTGGTATGGAGTAATAGGCGACGGCGATATCTTCACATCCTTCACTGATTTTACGGACCGGATTTTTAGAGAGGATTGTAAAACTGTGGACGTTAAAGGTTCTCATTCAGAGCACTTGGGAGATGAGATTCTCAACTTGAGGAATACATTGTTGCAGAGTGAACTGGAGAGGGAGAGAATAGCATTGGA...

Protein

Download Protein FASTA

227 aa · TkA04G075160|TK1151|PROTEIN

MPLTPDFDFLISTQTSPPLPISIFWYGVIGDGDIFTSFTDFTDRIFREDCKTVDVKGSHSEHLGDEILNLRNTLLQSELERERIALELEEEKKAQAERDKMLQESGELTEVKAEYEKLLMEFEAERTMNKIQIDNLTRRLADATSCLDEEPRVSYTSNSDISLTELEASVVIKQLEIQVLEKALSLQNLESVVELETEKDKEASNKYEKLYMELMAAKEEACLEMLL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G075160`
TK1151 ID	TkA04G075160
OH-1004 ID	LXL04_023841
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	89.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G075160

Location Chr04:19830670-19832360 (-)

Description Similar to KIN7O: Kinesin-like protein KIN-7O

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0421200`	Kinesin-like protein KIN-7I.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023841 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0008608 attachment of spindle microtubules to kinetochore Biological Process

GO:0033044 regulation of chromosome organization Biological Process

GO:0042327 positive regulation of phosphorylation Biological Process

GO:0140694 membraneless organelle assembly Biological Process

GO:1901987 regulation of cell cycle phase transition Biological Process

GO:0000776 kinetochore Cellular Component

GO:0000779 condensed chromosome, centromeric region Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005694 chromosome Cellular Component

KEGG gene cross-reference

ath:AT3G10180

dosa:Os09g0421200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.580

Rank 1 · TkA04G075160 · TK1151

Nucleus0.322

Rank 2 · TkA04G075160 · TK1151

Cell membrane0.121

Rank 3 · TkA04G075160 · TK1151

Golgi apparatus0.092

Rank 4 · TkA04G075160 · TK1151

Endoplasmic reticulum0.055

Rank 5 · TkA04G075160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25673Terminase_758-104 aa

PF07795DUF163569-182 aa

PF29579Phage_BPS1_2170-123 aa

PF29579Phage_BPS1_21164-212 aa

PF07795DUF1635164-215 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G075160	`PF25673`	Terminase_7	58	104	0.088	13.5
TkA04G075160	`PF07795`	DUF1635	69	182	2.6	8.6
TkA04G075160	`PF29579`	Phage_BPS1_21	70	123	0.81	10.5
TkA04G075160	`PF29579`	Phage_BPS1_21	164	212	0.81	10.5
TkA04G075160	`PF07795`	DUF1635	164	215	2.6	8.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`B9G3M6`	Oryza sativa subsp. japonica	sp\|B9G3M6\|KN7I_ORYSJ Kinesin-like protein KIN-7I	69.200%	Swiss-Prot	Low

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