TkA03G602480 | RubberDandelionOmics

Gene overview

TkA03G602480

Reference: TK1151 Chr: Chr03 Coordinates: 153043060-153045642 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1500 bp · TkA03G602480|TK1151|cDNA

ATGGCGACGTTGACTCCAGGGGTTTTATTGAAGTTACTGGATGCGATGAATTCAGGGGTGAAGCCTACAAGCGAACACAGGAGTTCACTTCTACAAGTTACGGATATCATGCCAGCTGATCTTGGCGAGAAAGATCTCTGGCCAAAACATGGGTTTTTCATAAAAGTTTCGGATTCATCTCATTCCATCTACGTCGGTTTACCTTTAGAAAAAGACGATCTTGTTCTCAGTAATAAAATCCAGCTTGGCCAATTCATTCA...

CDS

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1500 bp · TkA03G602480|TK1151|CDS

ATGGCGACGTTGACTCCAGGGGTTTTATTGAAGTTACTGGATGCGATGAATTCAGGGGTGAAGCCTACAAGCGAACACAGGAGTTCACTTCTACAAGTTACGGATATCATGCCAGCTGATCTTGGCGAGAAAGATCTCTGGCCAAAACATGGGTTTTTCATAAAAGTTTCGGATTCATCTCATTCCATCTACGTCGGTTTACCTTTAGAAAAAGACGATCTTGTTCTCAGTAATAAAATCCAGCTTGGCCAATTCATTCA...

Protein

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499 aa · TkA03G602480|TK1151|PROTEIN

MATLTPGVLLKLLDAMNSGVKPTSEHRSSLLQVTDIMPADLGEKDLWPKHGFFIKVSDSSHSIYVGLPLEKDDLVLSNKIQLGQFIHVQKLEFGSPVPIAKGVKPLPGRHPFVGMPEPLMGLKGKQETNHQKGNLHLNSKLSASRRSSWSTKVEHGICESPMSLKSCPLKFDQCTPMKQSSSMIRSSIRRASLSKVTETPVTVKKSFVTSSMVKVPRSKGNLCDKVAKMSTSPFNSAEKKSATSSPSTRVVSSSICGVKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G602480`
TK1151 ID	TkA03G602480
OH-1004 ID	LXL04_011570
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G602480

Location Chr03:153043060-153045642 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g23790`	Microtubule-associated protein controlling microtubule network organization (By similarity).	No verified direct reference in this release
`At1g70340`	Microtubule-associated protein controlling microtubule network organization (By similarity).	No verified direct reference in this release
`At4g13370`	Microtubule-associated protein controlling microtubule network organization.	No verified direct reference in this release
`At1g08760`	Microtubule-associated protein required, redundantly with CORD1, for the formation of the pitted secondary cell wall of metaxylem vessels.	CORTICAL MICROTUBULE DISORDERING1 Is Required for Secondary Cell Wall Patterning in Xylem Vessels.2017 · DOI: 10.1105/tpc.17.00663
`At3g14170`	Microtubule-associated protein required, redundantly with CORD2, for the formation of the pitted secondary cell wall of metaxylem vessels.	CORTICAL MICROTUBULE DISORDERING1 Is Required for Secondary Cell Wall Patterning in Xylem Vessels.2017 · DOI: 10.1105/tpc.17.00663

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011570 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0007020 microtubule nucleation Biological Process

GO:0048759 xylem vessel member cell differentiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005874 microtubule Cellular Component

GO:0008017 microtubule binding Molecular Function

GO:0043015 gamma-tubulin binding Molecular Function

GO:0060090 molecular adaptor activity Molecular Function

KEGG gene cross-reference

ath:AT1G08760

ath:AT1G23790

ath:AT1G70340

ath:AT4G13370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.664

Rank 1 · TkA03G602480 · TK1151

Cytoplasm0.320

Rank 2 · TkA03G602480 · TK1151

Cell membrane0.125

Rank 3 · TkA03G602480 · TK1151

Endoplasmic reticulum0.040

Rank 4 · TkA03G602480 · TK1151

Plastid0.018

Rank 5 · TkA03G602480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06075CORD_N4-120 aa

PF21647CORD_C228-228 aa

PF26412BrxE267-335 aa

PF21647CORD_C282-381 aa

PF21647CORD_C371-450 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G602480	`PF06075`	CORD_N	4	120	3.9e-48	162.9
TkA03G602480	`PF21647`	CORD_C	228	228	5.8e-23	82.8
TkA03G602480	`PF26412`	BrxE	267	335	0.14	13.3
TkA03G602480	`PF21647`	CORD_C	282	381	5.8e-23	82.8
TkA03G602480	`PF21647`	CORD_C	371	450	5.8e-23	82.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZUB7`	Arabidopsis thaliana	sp\|Q9ZUB7\|CORD4_ARATH Protein CORTICAL MICROTUBULE DISORDERING 4	43.100%	Swiss-Prot	Medium
`O64602`	Arabidopsis thaliana	sp\|O64602\|CORD5_ARATH Protein CORTICAL MICROTUBULE DISORDERING 5	40.100%	Swiss-Prot	Medium
`Q9T0K8`	Arabidopsis thaliana	sp\|Q9T0K8\|CORD3_ARATH Protein CORTICAL MICROTUBULE DISORDERING 3	58.300%	Swiss-Prot	Low
`Q9FRR2`	Arabidopsis thaliana	sp\|Q9FRR2\|CORD2_ARATH Protein CORTICAL MICROTUBULE DISORDERING 2	63.300%	Swiss-Prot	Low
`Q6NKR8`	Arabidopsis thaliana	sp\|Q6NKR8\|CORD1_ARATH Protein CORTICAL MICROTUBULE DISORDERING 1	51.700%	Swiss-Prot	Low

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