TkA03G592550 | RubberDandelionOmics

Gene overview

TkA03G592550

Reference: TK1151 Chr: Chr03 Coordinates: 150461886-150466752 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1567 bp · TkA03G592550|TK1151|cDNA

CTTAGTTTAAGCCGCTGAGGTCACTTTTTCGTCATCTTTCAAGCCGGGCGTCTTCTCATTCGTCCAAATGAGCCGTTCTTATACGTGTTCTTCTCTCCTGCCTTCCTTATCTCCTACATCCACCTGCTTGCTATTTGATGATTCCATACCTGCCAGGGTTCTTCCGGTTGTCGAGCGAAAACGCGAAGCTCTGGGTATAGTGTTGGACGTTTCTAAGTGGTAGTCGGCGGTAACGGTGCCCATTTACGATGCTCTTGGCA...

CDS

Download CDS FASTA

642 bp · TkA03G592550|TK1151|CDS

ATGCAGCCCGAGCTCAAAAGATTGAAGCTTCGAAGGAATAACTGGGATTCAGATACGTTCGAGTTGGGTGAAGTTCTTACTGAATTTGCATCACAGAAACGTGTTTATGAAGTTGTCGCTAAGCCTGTTGTGGAGAGTGTTCTTGATGGATATAATGGAACAGTCATGGCATATGGGCAAAGAGGTACTGGAAAGACCGACACACTTGGAAGACTTGGTGATGAAGATACTTCTGCAAGAACACGGTCTATCAAGTTTCA...

Protein

Download Protein FASTA

213 aa · TkA03G592550|TK1151|PROTEIN

MQPELKRLKLRRNNWDSDTFELGEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQRGTGKTDTLGRLGDEDTSARTRSIKFQIINRPYDEVATCFFNTREKKNLQELSGVYVFNVPEREQFDSLTSRFIKEFDQVEESFSKVIGSEFGIVPGSRDNSLYNSLWVAQALLRKGSAKTADKRILLLTNEDDPFGNIKGLTKLDMARTTLQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G592550`
TK1151 ID	TkA03G592550
OH-1004 ID	LXL04_007267
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	78.400
Protein coverage (%)	TK1151 100.000 / OH-1004 59.938 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G592550

Location Chr03:150461886-150466752 (+)

Description Similar to KU70: ATP-dependent DNA helicase 2 subunit KU70

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16970`	Single-stranded DNA-dependent ATP-dependent helicase.	Telomere length deregulation and enhanced sensitivity to genotoxic stress in Arabidopsis mutants deficient in Ku70.2002 · DOI: 10.1093/emboj/21.11.2819 Identification of Ku70 and Ku80 homologues in Arabidopsis thaliana: evidence for a role in the repair of DNA double-strand breaks.2002 · DOI: 10.1046/j.1365-313x.2002.01258.x Disruption of the Arabidopsis AtKu80 gene demonstrates an essential role for AtKu80 protein in efficient repair of DNA double-strand breaks in vivo.2002 · DOI: 10.1046/j.1365-313x.2002.01370.x Ku is required for telomeric C-rich strand maintenance but not for end-to-end chromosome fusions in Arabidopsis.2003 · DOI: 10.1073/pnas.0236128100
`At1g01950`	Involved in the control of epidermal-cell morphogenesis in roots and helical growth of roots by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules.	No verified direct reference in this release
`At1g12430`	Kinesin-like protein KIN-UA.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0184900`	Single-stranded DNA-dependent ATP-dependent helicase.	No verified direct reference in this release
`Os06g0137100`	Kinesin-like protein KIN-UB.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007267 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0006281 DNA repair Biological Process

GO:0006303 double-strand break repair via nonhomologous end joining Biological Process

GO:0006310 DNA recombination Biological Process

GO:0007018 microtubule-based movement Biological Process

GO:0009408 response to heat Biological Process

GO:0030705 cytoskeleton-dependent intracellular transport Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005874 microtubule Cellular Component

KEGG gene cross-reference

ath:AT1G01950

ath:AT1G12430

ath:AT1G16970

dosa:Os07g0184900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.553

Rank 1 · TkA03G592550 · TK1151

Cytoplasm0.374

Rank 2 · TkA03G592550 · TK1151

Cell membrane0.082

Rank 3 · TkA03G592550 · TK1151

Mitochondrion0.060

Rank 4 · TkA03G592550 · TK1151

Endoplasmic reticulum0.056

Rank 5 · TkA03G592550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225Kinesin6-72 aa

PF16796Microtub_bd14-90 aa

PF13191AAA_1644-104 aa

PF13401AAA_2252-95 aa

PF03731Ku_N84-208 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G592550	`PF00225`	Kinesin	6	72	5.7e-16	59.1
TkA03G592550	`PF16796`	Microtub_bd	14	90	2.3e-06	28.3
TkA03G592550	`PF13191`	AAA_16	44	104	0.035	15.3
TkA03G592550	`PF13401`	AAA_22	52	95	0.11	13.5
TkA03G592550	`PF03731`	Ku_N	84	208	2.4e-26	93.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FQ08`	Arabidopsis thaliana	sp\|Q9FQ08\|KU70_ARATH ATP-dependent DNA helicase 2 subunit KU70	68.400%	Swiss-Prot	Medium
`Q9LPC6`	Arabidopsis thaliana	sp\|Q9LPC6\|KINUB_ARATH Kinesin-like protein KIN-UB	85.000%	Swiss-Prot	Low
`Q9FZ06`	Arabidopsis thaliana	sp\|Q9FZ06\|KINUA_ARATH Kinesin-like protein KIN-UA	81.300%	Swiss-Prot	Low
`Q7F1M0`	Oryza sativa subsp. japonica	sp\|Q7F1M0\|KU70_ORYSJ ATP-dependent DNA helicase 2 subunit KU70	65.400%	Swiss-Prot	Medium
`Q5VQ09`	Oryza sativa subsp. japonica	sp\|Q5VQ09\|KINUB_ORYSJ Kinesin-like protein KIN-UB	85.000%	Swiss-Prot	Low

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