TkA03G555340 | RubberDandelionOmics

Gene overview

TkA03G555340

Reference: TK1151 Chr: Chr03 Coordinates: 140601439-140602822 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1061 bp · TkA03G555340|TK1151|cDNA

ACACACACAAGTAGAAAAGTATGTAAAGTGAGAAAGCATGATTGTGCATGACATTGAGGACAAAAGTTCTATTATTGTGCATGCATGGTGCTCGTAACATTTTCTGAGTATCTAAAATTCCTATATATACTATATTTATATTCCAAACACAAAACCCACAAAAAAGTGAAAAACTATTACCACCGGCTCTCTTTCCATCCTCCAAATTCTTGTGCATAACTTTCATTTCCCACCTGTATATACAACAAAATTAAATTATA...

CDS

Download CDS FASTA

429 bp · TkA03G555340|TK1151|CDS

ATGATGAAGATGATTAATGTGCTGCTGATTTCTTTAGTAATAGTCATATCCGCCATTGATGAAGACCGAAAGGTTTTTATCGCTTACATGGGATTTCTCCCGGAAGGCGAATACTCACCTTCTTTGCATCACTATGAAATCCTGAAAAACATTACCAACCCCCGGTTTGCAAGAAAATCTCTAATAAGAAGCTACCAAAGAAGCTTCAACGGATTTGCTGCTTATCTCTCCCAAGAAGAGCAACAAAAGTTGGCTGGTAA...

Protein

Download Protein FASTA

142 aa · TkA03G555340|TK1151|PROTEIN

MMKMINVLLISLVIVISAIDEDRKVFIAYMGFLPEGEYSPSLHHYEILKNITNPRFARKSLIRSYQRSFNGFAAYLSQEEQQKLAGKFQMHLYIYLQKNILKSSNINTSMKTYSISWLSSPCLCALTMSLPCLACCSNPYFG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G555340`
TK1151 ID	TkA03G555340
OH-1004 ID	LXL04_010920
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.500
Protein coverage (%)	TK1151 94.366 / OH-1004 16.708 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G555340

Location Chr03:140601439-140602822 (+)

Description Similar to SBT4.6: Subtilisin-like protease SBT4.6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58840`	Subtilisin-like protease SBT4.9.	No verified direct reference in this release
`At4g15040`	Subtilisin-like protease SBT4.2.	No verified direct reference in this release
`At5g59190`	Subtilisin-like protease SBT4.3.	No verified direct reference in this release
`At3g46850`	Subtilisin-like protease SBT4.6.	No verified direct reference in this release
`At5g59120`	Subtilisin-like protease SBT4.13.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010920 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0005576 extracellular region Cellular Component

GO:0004252 serine-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT3G46850

ath:AT5G59100

ath:AT5G59120

ath:AT5G59130

ath:AT5G59190

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.289

Rank 1 · TkA03G555340 · TK1151

Extracellular0.234

Rank 2 · TkA03G555340 · TK1151

Lysosome / Vacuole0.176

Rank 3 · TkA03G555340 · TK1151

Cytoplasm0.163

Rank 4 · TkA03G555340 · TK1151

Nucleus0.111

Rank 5 · TkA03G555340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05922Inhibitor_I937-85 aa

PF05922Inhibitor_I997-113 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G555340	`PF05922`	Inhibitor_I9	37	85	1e-06	30.0
TkA03G555340	`PF05922`	Inhibitor_I9	97	113	1e-06	30.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIM5`	Arabidopsis thaliana	sp\|Q9FIM5\|SBT49_ARATH Subtilisin-like protease SBT4.9	42.500%	Swiss-Prot	Medium
`O23357`	Arabidopsis thaliana	sp\|O23357\|SBT42_ARATH Subtilisin-like protease SBT4.2	49.400%	Swiss-Prot	Medium
`Q9FIF8`	Arabidopsis thaliana	sp\|Q9FIF8\|SBT43_ARATH Subtilisin-like protease SBT4.3	57.400%	Swiss-Prot	Low
`Q9STF7`	Arabidopsis thaliana	sp\|Q9STF7\|SBT46_ARATH Subtilisin-like protease SBT4.6	37.400%	Swiss-Prot	Medium
`Q9FIG2`	Arabidopsis thaliana	sp\|Q9FIG2\|SBT4D_ARATH Subtilisin-like protease SBT4.13	38.100%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card