TkA03G492170 | RubberDandelionOmics

Gene overview

TkA03G492170

Reference: TK1151 Chr: Chr03 Coordinates: 123431934-123443663 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1832 bp · TkA03G492170|TK1151|cDNA

TTTATTACCTTTTTAAAATGTCCCCCCATTATAGGTTAAGGGTCCTTGCGGCCGTTGCATGCAATTATTTTTGGGTTAGATTTATCTTAAGAAGAAGAACCCGGTAAACATGGGCAGTGTATATGAAACCCTAGCAATTTTCCTCTTATTGCCAACCCTTTTTTGTACTCCAGTATTTTCCACATCGACTGATGGGCTTGTTAGGATTGGACTGAAAAGAGAAACTTTTGAGCGGCTAGATCGTGTTGCTTCGATTCTTG...

CDS

Download CDS FASTA

762 bp · TkA03G492170|TK1151|CDS

ATGGGCAGTGTATATGAAACCCTAGCAATTTTCCTCTTATTGCCAACCCTTTTTTGTACTCCAGTATTTTCCACATCGACTGATGGGCTTGTTAGGATTGGACTGAAAAGAGAAACTTTTGAGCGGCTAGATCGTGTTGCTTCGATTCTTGATTTAAATGATGGTGATTACTTAGATACGTTTATTAGAAAGTATAGACAAAGTGCTAATAGTATTGGTGATTCCCAAGAGTCTGATACGGTACCATTGAAGAACTATAT...

Protein

Download Protein FASTA

253 aa · TkA03G492170|TK1151|PROTEIN

MGSVYETLAIFLLLPTLFCTPVFSTSTDGLVRIGLKRETFERLDRVASILDLNDGDYLDTFIRKYRQSANSIGDSQESDTVPLKNYMDAQYFGEIGIGTPPQKFKVIFDTGSSNLWVPSSKCSSVSCLFHANYKSNQSSTYKENGKHASVEYDGGSISGYLSEDDIMVGDIVIQDQEFIEATREPGITLLGGKFDGILGLGFKEISIANAIPVWDNMVNQHLVKRDIFSFWLNKKGNEGEGGEIIWRCRSKSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G492170`
TK1151 ID	TkA03G492170
OH-1004 ID	LXL04_009983
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	63.200
Protein coverage (%)	TK1151 97.233 / OH-1004 45.155 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G492170

Location Chr03:123431934-123443663 (+)

Description Similar to APA1: Aspartic proteinase A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g04460`	Involved in the processing and degradation of storage proteins.	No verified direct reference in this release
`At1g62290`	Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles.	No verified direct reference in this release
`At1g11910`	Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0567100`	Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009983 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0071484 cellular response to light intensity Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004175 endopeptidase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ag:CAA39602

ath:AT1G11910

ath:AT1G62290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.405

Rank 1 · TkA03G492170 · TK1151

Extracellular0.317

Rank 2 · TkA03G492170 · TK1151

Cytoplasm0.133

Rank 3 · TkA03G492170 · TK1151

Endoplasmic reticulum0.111

Rank 4 · TkA03G492170 · TK1151

Cell membrane0.094

Rank 5 · TkA03G492170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF31226BRC-2_N21-45 aa

PF20729PE-PGRS_C80-154 aa

PF00026Asp90-245 aa

PF14543TAXi_N91-211 aa

PF13650Asp_protease_2102-201 aa

PF06357Omega-toxin119-136 aa

PF06357Omega-toxin136-150 aa

PF31226BRC-2_N217-238 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G492170	`PF31226`	BRC-2_N	21	45	0.083	13.9
TkA03G492170	`PF20729`	PE-PGRS_C	80	154	0.096	12.8
TkA03G492170	`PF00026`	Asp	90	245	8.4e-59	200.3
TkA03G492170	`PF14543`	TAXi_N	91	211	4.4e-14	53.8
TkA03G492170	`PF13650`	Asp_protease_2	102	201	0.048	15.1
TkA03G492170	`PF06357`	Omega-toxin	119	136	4.0	8.0
TkA03G492170	`PF06357`	Omega-toxin	136	150	4.0	8.0
TkA03G492170	`PF31226`	BRC-2_N	217	238	0.083	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XEC4`	Arabidopsis thaliana	sp\|Q9XEC4\|APA3_ARATH Aspartic proteinase A3	55.700%	Swiss-Prot	High
`Q8VYL3`	Arabidopsis thaliana	sp\|Q8VYL3\|APA2_ARATH Aspartic proteinase A2	53.400%	Swiss-Prot	High
`O65390`	Arabidopsis thaliana	sp\|O65390\|APA1_ARATH Aspartic proteinase A1	52.900%	Swiss-Prot	High
`Q42456`	Oryza sativa subsp. japonica	sp\|Q42456\|ASPR1_ORYSJ Aspartic proteinase oryzasin-1	54.800%	Swiss-Prot	High

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