TkA03G396470 | RubberDandelionOmics

Gene overview

TkA03G396470

Reference: TK1151 Chr: Chr03 Coordinates: 98536603-98538741 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1082 bp · TkA03G396470|TK1151|cDNA

CTGGCTTGCTTCCCAAGAAGGGCTTATACTCGAATATATAGACTAAGGACAGAGAGAATCGGAAGCACTTTCGACCGGAATTTGGAGCTAATTTACCACCGACAGAGATCTACTAAGCCGCTAAATTCAATCGAAGATGTTTCTAACCAGAACCGAGTACGATAGAGGTGTTAACACCTTCTCTCCCGAAGGTCGGTTGTTTCAGGTTGAGTATGCCATTGAGGCCATTAAGTTGGGTTCAACTGCTATTGGGTTGAAGA...

CDS

Download CDS FASTA

714 bp · TkA03G396470|TK1151|CDS

ATGTTTCTAACCAGAACCGAGTACGATAGAGGTGTTAACACCTTCTCTCCCGAAGGTCGGTTGTTTCAGGTTGAGTATGCCATTGAGGCCATTAAGTTGGGTTCAACTGCTATTGGGTTGAAGACCAAGGAAGGAGTTGTTCTTGCTGTTGAAAAGAGAATTACCTCTCCACTCCTGGAGCCTAGTAGTGTTGAGAAAATCATGGAAATTGATGAACACATTGGGTGTGCCATGAGTGGATTAATTGCAGATGCCCGTAC...

Protein

Download Protein FASTA

237 aa · TkA03G396470|TK1151|PROTEIN

MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQYNKDLTLKEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPAEVEAVIGRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G396470`
TK1151 ID	TkA03G396470
OH-1004 ID	LXL04_019137
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	43.000
Protein coverage (%)	TK1151 89.030 / OH-1004 69.637 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G396470

Location Chr03:98536603-98538741 (+)

Description Similar to PAC1: Proteasome subunit alpha type-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14290`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release
`At1g53850`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0615700`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019137 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0000502 proteasome complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005839 proteasome core complex Cellular Component

GO:0019773 proteasome core complex, alpha-subunit complex Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

KEGG gene cross-reference

ath:AT3G22110

dosa:Os06g0167600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.756

Rank 1 · TkA03G396470 · TK1151

Nucleus0.578

Rank 2 · TkA03G396470 · TK1151

Mitochondrion0.046

Rank 3 · TkA03G396470 · TK1151

Cell membrane0.034

Rank 4 · TkA03G396470 · TK1151

Peroxisome0.034

Rank 5 · TkA03G396470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10584Proteasome_A_N8-30 aa

PF00227Proteasome32-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G396470	`PF10584`	Proteasome_A_N	8	30	7.3e-14	51.8
TkA03G396470	`PF00227`	Proteasome	32	218	5.6e-59	199.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q42134`	Arabidopsis thaliana	sp\|Q42134\|PSA5B_ARATH Proteasome subunit alpha type-5-B	95.400%	Swiss-Prot	High
`O81149`	Arabidopsis thaliana	sp\|O81149\|PSA5A_ARATH Proteasome subunit alpha type-5-A	95.400%	Swiss-Prot	High
`Q9LSU1`	Oryza sativa subsp. japonica	sp\|Q9LSU1\|PSA5_ORYSJ Proteasome subunit alpha type-5	96.200%	Swiss-Prot	High

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