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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G206110
Reference: TK1151 Chr: Chr03 Coordinates: 51716015-51722640 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2836 bp · TkA03G206110|TK1151|cDNA

TGAAACGACAACTTTTCGGAAACCAGATGGACCAATGTGAAAGTTTCAGCTGTAGCAGTGATTCAGGAGTAGCTGTGTCACACGTAGTCGTCCCCCATTTCTCTTCCTCTAAATCGGTAATCGAATGCAAATAGTCTACTTCGAATATTGATATTGACAGGCGATTGTACTCGGTATCTTGCATTTCTGTTAGAAATTGAAGTAAAAAACAATGTGGAAACTGAAGATCGCGGAGGGAGGGAGTCCATGGTTACGTTCGT...

CDS

Download CDS FASTA

2277 bp · TkA03G206110|TK1151|CDS

ATGTGGAAACTGAAGATCGCGGAGGGAGGGAGTCCATGGTTACGTTCGTTAAACGATCACGTCGGCCGACAATTTTGGGAGTTTGATCCCACGCTAGGGTCCCTTGAGGAACTCGCCGATATCGAGAAAGTTCGACAGACGTTCCATGAAAATCGGTTCGAGAAAAAACACAGCTCAGATCTACTTATGCGCAGTCAGTTTGCAAAAGAGAAGTCACTCACTGTATTCCCACCAAGAGTGAATATAAAAGATGCAGAAGA...

Protein

Download Protein FASTA

758 aa · TkA03G206110|TK1151|PROTEIN

MWKLKIAEGGSPWLRSLNDHVGRQFWEFDPTLGSLEELADIEKVRQTFHENRFEKKHSSDLLMRSQFAKEKSLTVFPPRVNIKDAEDITEEKVTNVLRRAIAFHSTLQADDGHWPGDYGGPMFLLPGLVITLTITGALNAVLSKEHKREICRYLYNHQNRDGGWGLHIEGHSTMFGSALNYVTLRLLGEGANDGEGAMEKGRKWILDHGGATSITSWGKFWLSVLGVFEWSGNNPLPPEMWVLPYFLPVHPGRMWCHCRM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G206110
TK1151 IDTkA03G206110
OH-1004 IDLXL04_007686
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G206110
LocationChr03:51716015-51722640 (+)
DescriptionSimilar to OSCPNX1: Cycloartenol Synthase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g07050 Converts oxidosqualene to cycloartenol and 1% parkeol.
Allelic mutant series reveal distinct functions for Arabidopsis cycloartenol synthase 1 in cell viability and plastid biogenesis.2008 · DOI: 10.1073/pnas.0712190105
Isolation of an Arabidopsis thaliana gene encoding cycloartenol synthase by functional expression in a yeast mutant lacking lanosterol synthase by the use of a chromatographic screen.1993 · DOI: 10.1073/pnas.90.24.11628

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007686 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0010027 thylakoid membrane organization Biological Process
GO:0010686 tetracyclic triterpenoid biosynthetic process Biological Process
GO:0016104 triterpenoid biosynthetic process Biological Process
GO:0016126 sterol biosynthetic process Biological Process
GO:0019745 pentacyclic triterpenoid biosynthetic process Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005811 lipid droplet Cellular Component
GO:0016020 membrane Cellular Component
GO:0016871 cycloartenol synthase activity Molecular Function
KEGG gene cross-reference
ath:AT2G07050
rcu:8262543
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.321
Rank 1 · TkA03G206110 · TK1151
Endoplasmic reticulum0.235
Rank 2 · TkA03G206110 · TK1151
Cytoplasm0.168
Rank 3 · TkA03G206110 · TK1151
Peroxisome0.102
Rank 4 · TkA03G206110 · TK1151
Cell membrane0.076
Rank 5 · TkA03G206110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13243SQHop_cyclase_C89-170 aa
PF09492Pec_lyase90-118 aa
PF13249SQHop_cyclase_N99-399 aa
PF00432Prenyltrans128-188 aa
PF07678TED_complement146-164 aa
PF09492Pec_lyase148-164 aa
PF13243SQHop_cyclase_C413-750 aa
PF00432Prenyltrans416-457 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G206110PF13243SQHop_cyclase_C891706.1e-54183.9
TkA03G206110PF09492Pec_lyase901180.00516.9
TkA03G206110PF13249SQHop_cyclase_N993997.1e-42144.3
TkA03G206110PF00432Prenyltrans1281883.3e-0730.7
TkA03G206110PF07678TED_complement1461640.001718.2
TkA03G206110PF09492Pec_lyase1481640.00516.9
TkA03G206110PF13243SQHop_cyclase_C4137506.1e-54183.9
TkA03G206110PF00432Prenyltrans4164573.3e-0730.7
TkA03G206110PF13249SQHop_cyclase_N5055337.1e-42144.3
TkA03G206110PF00432Prenyltrans5087133.3e-0730.7
TkA03G206110PF07678TED_complement5085380.001718.2
TkA03G206110PF09492Pec_lyase5656070.00516.9
TkA03G206110PF13249SQHop_cyclase_N5866087.1e-42144.3
TkA03G206110PF07678TED_complement6017140.001718.2
TkA03G206110PF13249SQHop_cyclase_N6376567.1e-42144.3
TkA03G206110PF09492Pec_lyase6376630.00516.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P38605Arabidopsis thalianasp|P38605|CAS1_ARATH Cycloartenol synthase79.200%Swiss-ProtHigh

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