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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G197570
Reference: TK1151 Chr: Chr03 Coordinates: 49599274-49602209 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2458 bp · TkA03G197570|TK1151|cDNA

TAATAATGGTTGTTTATTTAAATAAAAAGTTTTAAATTTATTGTAATTTTTGGGACGTTACAGAAATCTTAATATACAAAATTTTTAGCTATGAAATGCAGCGAGACAGGAAATGCAGACAGGAAATTTTTAGCTATGAAATCTATTGGTCCCCTAACATAACTATCAAGAAATGCAGACAAGAAATGCCGGTCGTCGGTTGTGTATACAAGAAATGCAGACAAGGAAAGTAGAAATCAAACCTGTCAAAGGGGTACCGG...

CDS

Download CDS FASTA

1176 bp · TkA03G197570|TK1151|CDS

ATGGCGAATTCGGGTTCTCCAAAGAAGGTCTTGATGATATGTGGCGATTACATGGAAGATGCCGAGGCGATGGTGCCATTTCAAGCATTGCAAGCTTACGGATTGTCCGTCGATGCTGTTTGCCCCGGTAAAAAGTCCGGCGACATTTGTCGTACTGCTATTCATCAAGGTTCTCCTCATCAGACATATTCCGAATCCCGTGGTCACAACTTCACTCTAAATGCAACTTTTGATGAGATCGATTCAAGCACATATGATGG...

Protein

Download Protein FASTA

391 aa · TkA03G197570|TK1151|PROTEIN

MANSGSPKKVLMICGDYMEDAEAMVPFQALQAYGLSVDAVCPGKKSGDICRTAIHQGSPHQTYSESRGHNFTLNATFDEIDSSTYDGLIIPGGRAPEYLSMNESVLHLVKHFAKSGKPIASICHGQLILAAADVVKGRKMTAYPTVGPMLVAAGAHWVEPETMASCTIDGNMVTGAAYDGHAEYISHFIKALGGTITGSNKRILFLCGDYMEDYEVFVPFQSLEALDCHVDAVCPNKSAGYTCPTAVHDFEGDQTYSEKP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G197570
TK1151 IDTkA03G197570
OH-1004 IDLXL04_007620
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G197570
LocationChr03:49599274-49602209 (+)
DescriptionSimilar to DJ1D: Protein DJ-1 homolog D
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g02720 Possesses glyoxalase I activity. No verified direct reference in this release
At2g38860 May be involved in oxidative stress response. No verified direct reference in this release
At3g54600 May be involved in oxidative stress response. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007620 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0106044 guanine deglycation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0004462 lactoylglutathione lyase activity Molecular Function
GO:0008233 peptidase activity Molecular Function
GO:0019172 glyoxalase III activity Molecular Function
GO:0036524 protein deglycase activity Molecular Function
KEGG gene cross-reference
ath:AT2G38860
ath:AT3G02720
ath:AT3G54600
pab:PAB0311
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.818
Rank 1 · TkA03G197570 · TK1151
Nucleus0.303
Rank 2 · TkA03G197570 · TK1151
Mitochondrion0.078
Rank 3 · TkA03G197570 · TK1151
Cell membrane0.068
Rank 4 · TkA03G197570 · TK1151
Endoplasmic reticulum0.049
Rank 5 · TkA03G197570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01965DJ-1_PfpI8-190 aa
PF07685GATase_38-18 aa
PF26937DUF828834-56 aa
PF04204HTS60-93 aa
PF24025Ig_DR_A0283-like70-93 aa
PF00117GATase73-132 aa
PF18011Catalase_C73-135 aa
PF07685GATase_382-130 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G197570PF01965DJ-1_PfpI81909.3e-98325.5
TkA03G197570PF07685GATase_38184.4e-0730.4
TkA03G197570PF26937DUF828834560.1113.5
TkA03G197570PF04204HTS60930.02414.4
TkA03G197570PF24025Ig_DR_A0283-like70930.1313.3
TkA03G197570PF00117GATase731321e-1042.3
TkA03G197570PF18011Catalase_C731352.2e-0628.0
TkA03G197570PF07685GATase_3821304.4e-0730.4
TkA03G197570PF17124ThiJ_like831451.6e-0525.5
TkA03G197570PF01174SNO831310.000720.2
TkA03G197570PF09825BPL_N881250.01115.4
TkA03G197570PF13507GATase_5981390.1811.6
TkA03G197570PF07722Peptidase_C261051310.0001122.8
TkA03G197570PF26937DUF82881101270.1113.5
TkA03G197570PF04204HTS1651770.02414.4
TkA03G197570PF01965DJ-1_PfpI2013829.3e-98325.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M8R4Arabidopsis thalianasp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D74.900%Swiss-ProtHigh
Q9ZV19Arabidopsis thalianasp|Q9ZV19|DJ1E_ARATH DJ-1 protein homolog E40.100%Swiss-ProtMedium
Q9M1G8Arabidopsis thalianasp|Q9M1G8|DJ1F_ARATH DJ-1 protein homolog F40.300%Swiss-ProtMedium

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