TkA03G175600 | RubberDandelionOmics

Gene overview

TkA03G175600

Reference: TK1151 Chr: Chr03 Coordinates: 44278050-44284241 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1668 bp · TkA03G175600|TK1151|cDNA

ATGGCAGATACTTCCTCCGGTTCTTCCGGCTCTTTGCATTCAGAGGACACCGAAATGGTGTCGGTTCCTAACTCCTCTGAATCTGCCTCTGAGGTACCAGCTCAACACGATGAACCGGTTCATCACGATGATCCCGCACCTCCACCTCCACCGGGGGAGCAAGTTCTTGCTCAACCCATTGCTCCTTCTGAGGGGGAGCAACACCAACTCACCACCCTACTTACCCAACTCCAAACCACCATAACTAACCTTGACACCAA...

CDS

Download CDS FASTA

3354 bp · TkA03G175600|TK1151|CDS

ATGGCAGATACTTCCTCCGGTTCTTCCGGCTCTTTGCATTCAGAGGACACCGAAATGGTGTCGGTTCCTAACTCCTCTGAATCTGCCTCTGAGGTACCAGCTCAACACGATGAACCGGTTCATCACGATGATCCCGCACCTCCACCTCCACCGGTAAACCAACACATCTACTTTACCTCATCTTCATCTTCTCCTCCCACACAAATACCCGAACACACTCACTCCTCAGCACATACAGTATCCGATTCAAACGCTAAAGG...

Protein

Download Protein FASTA

1117 aa · TkA03G175600|TK1151|PROTEIN

MADTSSGSSGSLHSEDTEMVSVPNSSESASEVPAQHDEPVHHDDPAPPPPPVNQHIYFTSSSSSPPTQIPEHTHSSAHTVSDSNAKGEQHFDQPAPPPSQGEQVLAQPIAPSEGEQHQLTTLLTQLQTTITNLDTKVSALDTRLARVERDVRAIRQIIAPDSSTDSVPETPPHQPPPSLPSLQNRPPSPPSNQPPPPPPNQPPPPPNQPPPRNPTPPSSDWSSANNSPHSDVGNKGENDSHESEQISDSDSEVYEMDISY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G175600`
TK1151 ID	TkA03G175600
OH-1004 ID	LXL04_007871
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	56.500
Protein coverage (%)	TK1151 60.788 / OH-1004 42.070 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G175600`
Location	Chr03:44278050-44284241 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_007871` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.691

Rank 1 · TkA03G175600 · TK1151

Cytoplasm0.383

Rank 2 · TkA03G175600 · TK1151

Mitochondrion0.058

Rank 3 · TkA03G175600 · TK1151

Cell membrane0.028

Rank 4 · TkA03G175600 · TK1151

Endoplasmic reticulum0.023

Rank 5 · TkA03G175600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05531NPV_P10122-157 aa

PF09747CCD97-like_C803-880 aa

PF27710TRM10_TRM10A804-1069 aa

PF05531NPV_P10820-854 aa

PF09747CCD97-like_C1057-1105 aa

PF27710TRM10_TRM10A1074-1109 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G175600	`PF05531`	NPV_P10	122	157	0.026	15.7
TkA03G175600	`PF09747`	CCD97-like_C	803	880	7.5	7.3
TkA03G175600	`PF27710`	TRM10_TRM10A	804	1069	1.4e-73	248.2
TkA03G175600	`PF05531`	NPV_P10	820	854	0.026	15.7
TkA03G175600	`PF09747`	CCD97-like_C	1057	1105	7.5	7.3
TkA03G175600	`PF27710`	TRM10_TRM10A	1074	1109	1.4e-73	248.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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