TkA03G145870 | RubberDandelionOmics

Gene overview

TkA03G145870

Reference: TK1151 Chr: Chr03 Coordinates: 37173749-37177073 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1782 bp · TkA03G145870|TK1151|cDNA

ATGAGAACGATTTCAGCTGATCCTGACGAAATCGATGTCTTTCAACGTCACGTTGAAGAAGATGAATATATACTGACATTTCAACAGGAAGACGACGAATCTTCTGATGATTACGACGAAACAGATAACGTTTCAGGTTCAGTTTCTTCTTCCTCTATTGACTCAAACTCCAGCAGTACCACAAGCAGATTTGTTGCAGAGAATAGTCACAACACGGATGTTCATGATGTTAAACCTGATGTACCTGATGAATTCAAACC...

CDS

Download CDS FASTA

1782 bp · TkA03G145870|TK1151|CDS

ATGAGAACGATTTCAGCTGATCCTGACGAAATCGATGTCTTTCAACGTCACGTTGAAGAAGATGAATATATACTGACATTTCAACAGGAAGACGACGAATCTTCTGATGATTACGACGAAACAGATAACGTTTCAGGTTCAGTTTCTTCTTCCTCTATTGACTCAAACTCCAGCAGTACCACAAGCAGATTTGTTGCAGAGAATAGTCACAACACGGATGTTCATGATGTTAAACCTGATGTACCTGATGAATTCAAACC...

Protein

Download Protein FASTA

593 aa · TkA03G145870|TK1151|PROTEIN

MRTISADPDEIDVFQRHVEEDEYILTFQQEDDESSDDYDETDNVSGSVSSSSIDSNSSSTTSRFVAENSHNTDVHDVKPDVPDEFKPNKLMRFRTVNDAIDMYRSYAEKAGFDVRLNTERKSGERVIHKYLVCHRNGKPPNKSIEIKNKCNTHYRSTDCKAKIVIKHIDGSTDYRFDKFEELHNHEMEDAFHGIVVDFKNFTRDMGSIIGSNDAQLIVNKLLDRKENYPNFSYYHRLDENKVLNALFWADETEKAYYNEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G145870`
TK1151 ID	TkA03G145870
OH-1004 ID	LXL04_031554
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	72.600
Protein coverage (%)	TK1151 98.314 / OH-1004 79.914 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G145870

Location Chr03:37173749-37177073 (+)

Description Similar to FRS5: Protein FAR1-RELATED SEQUENCE 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38180`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031554 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009585 red, far-red light phototransduction Biological Process

GO:0009639 response to red or far red light Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0010018 far-red light signaling pathway Biological Process

GO:0010218 response to far red light Biological Process

GO:0042753 positive regulation of circadian rhythm Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:1900056 negative regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G52520

ath:AT3G22170

ath:AT4G15090

ath:AT4G38180

ath:AT5G28530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.944

Rank 1 · TkA03G145870 · TK1151

Cytoplasm0.141

Rank 2 · TkA03G145870 · TK1151

Mitochondrion0.019

Rank 3 · TkA03G145870 · TK1151

Cell membrane0.014

Rank 4 · TkA03G145870 · TK1151

Endoplasmic reticulum0.008

Rank 5 · TkA03G145870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18823InPase2-50 aa

PF24225DUF744122-42 aa

PF18823InPase64-109 aa

PF03101FAR1102-187 aa

PF21056ZSWIM1-3_RNaseH-like236-275 aa

PF18823InPase236-265 aa

PF03101FAR1256-270 aa

PF24225DUF7441412-436 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G145870	`PF18823`	InPase	2	50	5.9	7.5
TkA03G145870	`PF24225`	DUF7441	22	42	0.13	13.0
TkA03G145870	`PF18823`	InPase	64	109	5.9	7.5
TkA03G145870	`PF03101`	FAR1	102	187	1.3e-13	52.1
TkA03G145870	`PF21056`	ZSWIM1-3_RNaseH-like	236	275	0.0067	17.1
TkA03G145870	`PF18823`	InPase	236	265	5.9	7.5
TkA03G145870	`PF03101`	FAR1	256	270	1.3e-13	52.1
TkA03G145870	`PF24225`	DUF7441	412	436	0.13	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SZL8`	Arabidopsis thaliana	sp\|Q9SZL8\|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5	24.200%	Swiss-Prot	Low

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