TkA02G566940 | RubberDandelionOmics

Gene overview

TkA02G566940

Reference: TK1151 Chr: Chr02 Coordinates: 146485838-146494002 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1993 bp · TkA02G566940|TK1151|cDNA

CTCTCTATAAAGCCCATTGTTTTTATTTTATTTAGTTTTTTGTGAGAATGTCATTTCAAGTGGAGGAGACCCAGCAAAACAAAAGAGTTGGAGGTGACAAAGAAATGGAGTGGGTTCGTGATTCATCTTTGGATCATAAAGGGAGACTTCCTCTTCGATCCTCCACAGGAACTTGGAGAGCCTCATTCTTCATCATCGCGATCGAGTTCACTGAAAGACTTAGCTACTTTGCCATAGCAACAAATCTCATCACCTACCTC...

CDS

Download CDS FASTA

1704 bp · TkA02G566940|TK1151|CDS

ATGTCATTTCAAGTGGAGGAGACCCAGCAAAACAAAAGAGTTGGAGGTGACAAAGAAATGGAGTGGGTTCGTGATTCATCTTTGGATCATAAAGGGAGACTTCCTCTTCGATCCTCCACAGGAACTTGGAGAGCCTCATTCTTCATCATCGCGATCGAGTTCACTGAAAGACTTAGCTACTTTGCCATAGCAACAAATCTCATCACCTACCTCACAAAAGTGATGCATCAAGACCTCACAACTGCTGCCAAAAATGTCAA...

Protein

Download Protein FASTA

567 aa · TkA02G566940|TK1151|PROTEIN

MSFQVEETQQNKRVGGDKEMEWVRDSSLDHKGRLPLRSSTGTWRASFFIIAIEFTERLSYFAIATNLITYLTKVMHQDLTTAAKNVNNWAGVTTITPLLGAFIADAYTGRFLMILLSSSIYLMGLGILTMSEFIPSIKPSKGKVHELVFFTGIYLLSLGSGGIKPSLESFGADQFDDDNLKERKGKMSFFNWWNTALCSGLLLAVTVLVYLQDNVNWGFANIVLTVTMAITIIIFYFGRKFYRYRVPKGSPFTPILQVLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G566940`
TK1151 ID	TkA02G566940
OH-1004 ID	LXL04_012406
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G566940

Location Chr02:146485838-146494002 (-)

Description Similar to NPF5.6: Protein NRT1/ PTR FAMILY 5.6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37900`	Protein NRT1/ PTR FAMILY 5.6.	No verified direct reference in this release
`At3g53960`	Protein NRT1/ PTR FAMILY 5.7.	No verified direct reference in this release
`At1g72125`	Protein NRT1/ PTR FAMILY 5.13.	No verified direct reference in this release
`At3g54140`	Peptide transporter.	AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At1g22550`	Protein NRT1/ PTR FAMILY 5.16.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012406 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006857 oligopeptide transport Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0015031 protein transport Biological Process

GO:0042938 dipeptide transport Biological Process

GO:0042939 tripeptide transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G62200

ath:AT2G37900

ath:AT3G53960

ath:AT3G54140

ath:AT5G01180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.798

Rank 1 · TkA02G566940 · TK1151

Endoplasmic reticulum0.080

Rank 2 · TkA02G566940 · TK1151

Cytoplasm0.068

Rank 3 · TkA02G566940 · TK1151

Lysosome / Vacuole0.054

Rank 4 · TkA02G566940 · TK1151

Mitochondrion0.027

Rank 5 · TkA02G566940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690MFS_140-176 aa

PF07690MFS_168-504 aa

PF00854PTR2112-516 aa

PF05255UPF0220201-240 aa

PF17272DUF5337201-212 aa

PF17272DUF5337220-240 aa

PF05725FNIP325-347 aa

PF05255UPF0220414-468 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G566940	`PF07690`	MFS_1	40	176	6.1e-11	42.6
TkA02G566940	`PF07690`	MFS_1	68	504	6.1e-11	42.6
TkA02G566940	`PF00854`	PTR2	112	516	4.8e-86	289.8
TkA02G566940	`PF05255`	UPF0220	201	240	1.0	9.6
TkA02G566940	`PF17272`	DUF5337	201	212	5.4	7.6
TkA02G566940	`PF17272`	DUF5337	220	240	5.4	7.6
TkA02G566940	`PF05725`	FNIP	325	347	0.034	15.0
TkA02G566940	`PF05255`	UPF0220	414	468	1.0	9.6
TkA02G566940	`PF17272`	DUF5337	509	551	5.4	7.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0CI03`	Arabidopsis thaliana	sp\|P0CI03\|PTR28_ARATH Protein NRT1/ PTR FAMILY 5.6	58.700%	Swiss-Prot	High
`Q9M331`	Arabidopsis thaliana	sp\|Q9M331\|PTR45_ARATH Protein NRT1/ PTR FAMILY 5.7	56.200%	Swiss-Prot	High
`Q0WSZ6`	Arabidopsis thaliana	sp\|Q0WSZ6\|PTR23_ARATH Protein NRT1/ PTR FAMILY 5.13	42.300%	Swiss-Prot	Medium
`Q9M390`	Arabidopsis thaliana	sp\|Q9M390\|PTR1_ARATH Protein NRT1/ PTR FAMILY 8.1	40.500%	Swiss-Prot	Medium
`Q9SK96`	Arabidopsis thaliana	sp\|Q9SK96\|PTR10_ARATH Protein NRT1/ PTR FAMILY 5.16	43.200%	Swiss-Prot	Medium

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