TkA02G536580 | RubberDandelionOmics

Gene overview

TkA02G536580

Reference: TK1151 Chr: Chr02 Coordinates: 138349890-138350276 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

387 bp · TkA02G536580|TK1151|cDNA

ATGGGCCAGAGTGTTTCCTATGCTGTTCTTGAGTTCCCAATCGGGTCGATCAACCCGCTTCATATCCACCCACGGGCTACAGAGCTTTTGTTTGTGATTGCGGGCTCTTTGGAAGTTGGGTTTGTTGACACTTCCAACAAGCTTTTTACTCAGAAACTTGCGACTGGTGATATGTTTGTGTTTCCTAAAGGACTTGTTCACTTTCAGTATAATTCTAATGGTACTGAACCTGCAATGGCGGTTTCGACTTTTGGGAGTGC...

CDS

Download CDS FASTA

387 bp · TkA02G536580|TK1151|CDS

ATGGGCCAGAGTGTTTCCTATGCTGTTCTTGAGTTCCCAATCGGGTCGATCAACCCGCTTCATATCCACCCACGGGCTACAGAGCTTTTGTTTGTGATTGCGGGCTCTTTGGAAGTTGGGTTTGTTGACACTTCCAACAAGCTTTTTACTCAGAAACTTGCGACTGGTGATATGTTTGTGTTTCCTAAAGGACTTGTTCACTTTCAGTATAATTCTAATGGTACTGAACCTGCAATGGCGGTTTCGACTTTTGGGAGTGC...

Protein

Download Protein FASTA

128 aa · TkA02G536580|TK1151|PROTEIN

MGQSVSYAVLEFPIGSINPLHIHPRATELLFVIAGSLEVGFVDTSNKLFTQKLATGDMFVFPKGLVHFQYNSNGTEPAMAVSTFGSANAGTQSIANSVFNSTIYEGILAQSFNTSVNIVEKIESGLKG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G536580`
TK1151 ID	TkA02G536580
OH-1004 ID	LXL04_012820
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 62.745 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G536580

Location Chr02:138349890-138350276 (+)

Description Similar to Os09g0568700: Germin-like protein 9-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09560`	May play a role in plant defense.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0568700`	May play a role in plant defense.	No verified direct reference in this release
`Os09g0568600`	May play a role in plant defense.	No verified direct reference in this release
`Os09g0568500`	May play a role in plant defense.	No verified direct reference in this release
`Os05g0277500`	May play a role in plant defense.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012820 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010497 plasmodesmata-mediated intercellular transport Biological Process

GO:2000280 regulation of root development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

GO:0030145 manganese ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G02335

dosa:Os05g0277500

dosa:Os09g0568500

dosa:Os09g0568700

osa:107277596

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.944

Rank 1 · TkA02G536580 · TK1151

Cytoplasm0.024

Rank 2 · TkA02G536580 · TK1151

Endoplasmic reticulum0.015

Rank 3 · TkA02G536580 · TK1151

Cell membrane0.012

Rank 4 · TkA02G536580 · TK1151

Lysosome / Vacuole0.011

Rank 5 · TkA02G536580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07847PCO_ADO4-48 aa

PF00190Cupin_15-119 aa

PF07883Cupin_29-83 aa

PF19480DUF601615-48 aa

PF05899Cupin_326-65 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G536580	`PF07847`	PCO_ADO	4	48	0.015	15.5
TkA02G536580	`PF00190`	Cupin_1	5	119	2.1e-31	109.3
TkA02G536580	`PF07883`	Cupin_2	9	83	9.1e-11	42.0
TkA02G536580	`PF19480`	DUF6016	15	48	0.14	12.5
TkA02G536580	`PF05899`	Cupin_3	26	65	0.21	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P94014`	Arabidopsis thaliana	sp\|P94014\|GL21_ARATH Germin-like protein subfamily 2 member 1	50.000%	Swiss-Prot	High
`Q652P9`	Oryza sativa subsp. japonica	sp\|Q652P9\|GL93_ORYSJ Germin-like protein 9-3	59.200%	Swiss-Prot	High
`Q652Q0`	Oryza sativa subsp. japonica	sp\|Q652Q0\|GL92_ORYSJ Putative germin-like protein 9-2	56.800%	Swiss-Prot	High
`Q652Q1`	Oryza sativa subsp. japonica	sp\|Q652Q1\|GL91_ORYSJ Germin-like protein 9-1	51.200%	Swiss-Prot	High
`Q6I544`	Oryza sativa subsp. japonica	sp\|Q6I544\|GL52_ORYSJ Germin-like protein 5-1	46.800%	Swiss-Prot	Medium

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