Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2409 bp · TkA02G116930|TK1151|cDNA
AAGAGATATAATAGTAACATTTTTTTCTATCTAATTCATACGACACATCTTAATATGCTAAATAAGAGATAAATCCTCTTTTTACACCTTAATCCTTCTTAATTGAACCACTTTTTTATGTACAAAAACCAGTCTACTTCTTCTTCAACCCGTTTGAAATAAGTCGTTCCTCAATCTTCAACATGTTTGTCTTTTATACTTGAAGACTCAGATTAAATTCCTAAAAAATGCAATTTTTGTTCATCAAATTCAATTTTTTT...
1395 bp · TkA02G116930|TK1151|CDS
ATGGCTCCTAGAACCCACGTGACGGATCTAGGAAGCATAGCCAACGTTGATCTGACCGAACTCGGCGCAGGCAAGGAAGGCTGGCTTGATAACCCCATTCTCATTTGTGCTCTCGATACAAATTCTCTCGCAATCGCCAATCGGTACTACATCCTTGTTCTCGAGTGGTCTAACGCCTCTGGTAATGCTAGTTTTCGGGTCAAGATCCGACCGAATCTTTCCCCAATTGAGGCCGAGTATATATCTGCCCTTGAGTGGTT...
Protein
Download Protein FASTA464 aa · TkA02G116930|TK1151|PROTEIN
MAPRTHVTDLGSIANVDLTELGAGKEGWLDNPILICALDTNSLAIANRYYILVLEWSNASGNASFRVKIRPNLSPIEAEYISALEWLVFDDIRVVAVGTSCGYLLIYSLGGDLIHKQLVYPGRILRLRVRGTKRDITEDTSSFEEVCVVISGIIARFDGSDLQKVLEKWYQETQNQFWNPNKDPEEVSDHSFDRIPYQLWNVNGYGSCTDAAITGVMPPPLLDLQVFIYLWYLNSAGFIVEQSSDRYYCAVTIGVDAAIS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G116930 |
|---|---|
| TK1151 ID | TkA02G116930 |
| OH-1004 ID | LXL04_016622 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G116930 |
|---|---|
| Location | Chr02:30517382-30521226 (+) |
| Description | Similar to Rab3gap2: Rab3 GTPase-activating protein non-catalytic subunit |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0016236 macroautophagy Biological Process GO:0043087 regulation of GTPase activity Biological Process GO:0043547 positive regulation of GTPase activity Biological Process GO:0097051 establishment of protein localization to endoplasmic reticulum membrane Biological Process GO:1903061 positive regulation of protein lipidation Biological Process GO:1903373 positive regulation of endoplasmic reticulum tubular network organization Biological Process GO:2000786 positive regulation of autophagosome assembly Biological Process GO:0000421 autophagosome membrane Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005776 autophagosome Cellular Component |
| KEGG gene cross-reference | dme:Dmel_CG7061 hsa:25782 mmu:98732 rno:289350 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14655RAB3GAP2_N28-430 aaPF03820SFXNs242-301 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G116930 | PF14655 | RAB3GAP2_N | 28 | 430 | 9.1e-120 | 401.4 |
| TkA02G116930 | PF03820 | SFXNs | 242 | 301 | 0.41 | 10.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.