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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G637920
Reference: TK1151 Chr: Chr01 Coordinates: 161404958-161406850 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1797 bp · TkA01G637920|TK1151|cDNA

ATGTCTGGATATGTACTCTCTTCAACTTCGTTACCTGTTCCTGAAACCCACCAATCCAATTCTCTAAACCCCACACCTCAATCCCTTACAAACGATCTTCTCTACACTTTCAAGTCTCCATTTGAGCTCAAACAAATCCACGCCCATATCATCAAAACCAACACATCTCCTTCTATTCTCCGACTTTCCCGTGTTGCGTCTGTCTGCGCTCGGACTCCAAGCTTCCCCTACGCTAGAAAAATCATTCAGCTCTCCGGCAA...

CDS

Download CDS FASTA

1797 bp · TkA01G637920|TK1151|CDS

ATGTCTGGATATGTACTCTCTTCAACTTCGTTACCTGTTCCTGAAACCCACCAATCCAATTCTCTAAACCCCACACCTCAATCCCTTACAAACGATCTTCTCTACACTTTCAAGTCTCCATTTGAGCTCAAACAAATCCACGCCCATATCATCAAAACCAACACATCTCCTTCTATTCTCCGACTTTCCCGTGTTGCGTCTGTCTGCGCTCGGACTCCAAGCTTCCCCTACGCTAGAAAAATCATTCAGCTCTCCGGCAA...

Protein

Download Protein FASTA

598 aa · TkA01G637920|TK1151|PROTEIN

MSGYVLSSTSLPVPETHQSNSLNPTPQSLTNDLLYTFKSPFELKQIHAHIIKTNTSPSILRLSRVASVCARTPSFPYARKIIQLSGKPETLIWNSCLKELAESDSPFDAIRLFSQLCQYDVCFDSFTFSFLLKACTKLSYGLEPRIIHGFIEKLGFQSNLFLQNSMVHLYAVSGEINDACKLFDKMPERDVVTWNIMITQLVKNGHIDEAYSFFSKMPERNLSPNEVTIVAVLAACADIGALDLGKKIHNSLNQKGFTKN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G637920
TK1151 IDTkA01G637920
OH-1004 IDLXL04_018443
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)43.000
Protein coverage (%)TK1151 93.144 / OH-1004 95.556
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G637920
LocationChr01:161404958-161406850 (-)
DescriptionSimilar to PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g66520 Pentatricopeptide repeat-containing protein At5g66520. No verified direct reference in this release
At1g31920 Pentatricopeptide repeat-containing protein At1g31920. No verified direct reference in this release
At2g01510 Pentatricopeptide repeat-containing protein At2g01510, mitochondrial. No verified direct reference in this release
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G59720
ath:AT1G74630
ath:AT2G01510
ath:AT4G21065
ath:AT5G48910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.612
Rank 1 · TkA01G637920 · TK1151
Plastid0.228
Rank 2 · TkA01G637920 · TK1151
Nucleus0.066
Rank 3 · TkA01G637920 · TK1151
Cytoplasm0.040
Rank 4 · TkA01G637920 · TK1151
Cell membrane0.006
Rank 5 · TkA01G637920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long45-83 aa
PF13041PPR_288-137 aa
PF01535PPR92-117 aa
PF29070MSC6_N92-141 aa
PF17177PPR_long107-241 aa
PF12854PPR_1121-134 aa
PF01535PPR126-138 aa
PF13812PPR_3127-135 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G637920PF17177PPR_long45832.2e-1144.2
TkA01G637920PF13041PPR_2881371.2e-54182.9
TkA01G637920PF01535PPR921174.6e-45149.5
TkA01G637920PF29070MSC6_N921413.6e-1453.4
TkA01G637920PF17177PPR_long1072412.2e-1144.2
TkA01G637920PF12854PPR_11211343e-30104.3
TkA01G637920PF01535PPR1261384.6e-45149.5
TkA01G637920PF13812PPR_31271354.1e-2175.5
TkA01G637920PF13812PPR_31521884.1e-2175.5
TkA01G637920PF18768RNPP_C1551860.06313.5
TkA01G637920PF13041PPR_21641901.2e-54182.9
TkA01G637920PF01535PPR1641904.6e-45149.5
TkA01G637920PF12854PPR_11641863e-30104.3
TkA01G637920PF13428TPR_141661860.00120.3
TkA01G637920PF24760TPR_IF140_C1661860.2712.4
TkA01G637920PF14559TPR_191671900.0006520.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJY7Arabidopsis thalianasp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g6652043.800%Swiss-ProtMedium
Q9C6T2Arabidopsis thalianasp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g3192039.900%Swiss-ProtMedium
Q9ZVF4Arabidopsis thalianasp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510, mitochondrial39.200%Swiss-ProtMedium
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic38.600%Swiss-ProtMedium
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic44.200%Swiss-ProtMedium

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