TkA01G630960 | RubberDandelionOmics

Gene overview

TkA01G630960

Reference: TK1151 Chr: Chr01 Coordinates: 159562975-159565776 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1904 bp · TkA01G630960|TK1151|cDNA

AGCCACCTGGTCCTTGATCCGTCCCTACATACACACTCTCCCCAATCACCATCTACACTCACGGACCTCACCTTATATGCATACATTTTTATACATATACCCCAATTTATCTCTATACCAACACCTGCAAACCAAACTCGCGACTGATCACCCATGGAAGGCGTGATGGGTTCCTCTTCGGCTTCGCCGTACCTGAAACTGGTGTCTTGCAGAGATAAGAGCATGGGATTTCCGTGTCTCAGGGATGATTTGTTGGGCAA...

CDS

Download CDS FASTA

1182 bp · TkA01G630960|TK1151|CDS

ATGGAAGGCGTGATGGGTTCCTCTTCGGCTTCGCCGTACCTGAAACTGGTGTCTTGCAGAGATAAGAGCATGGGATTTCCGTGTCTCAGGGATGATTTGTTGGGCAAATCACTGTTGAGAATCCCCGTTCACCATTTTCGGAATCAGCTGAAGAACATTGAAGTCGATTCCAAGCTCTCAATCTCGGCTTCATCAACACACAGAGGTGTTCGTCTCGCTTCGCTCTCATCATCTCACACCCAGGCAGAGGTCGTGAACCA...

Protein

Download Protein FASTA

393 aa · TkA01G630960|TK1151|PROTEIN

MEGVMGSSSASPYLKLVSCRDKSMGFPCLRDDLLGKSLLRIPVHHFRNQLKNIEVDSKLSISASSTHRGVRLASLSSSHTQAEVVNQELLTEQSPNGYTKPRTVCVRFQLQKECSFGQNFLIVGEDPIFGLWDPENAIPLTWSDGHVWSVDLEIPIGKCIKFKFIMQDGNGKFMWQPGPDRVLECWEAMNVITLCEDWENPDLRRIFEVDPTLNEVTESAATADLQAVADNERVPVQLMDVISSTGIPKTNESKGYAINM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G630960`
TK1151 ID	TkA01G630960
OH-1004 ID	LXL04_000147
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G630960`
Location	Chr01:159562975-159565776 (-)
Description	Similar to cgt: Cyclomaltodextrin glucanotransferase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000147` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000272 polysaccharide catabolic process Biological Process GO:0005975 carbohydrate metabolic process Biological Process GO:0005576 extracellular region Cellular Component GO:0004339 glucan 1,4-alpha-glucosidase activity Molecular Function GO:0004556 alpha-amylase activity Molecular Function GO:0043895 cyclomaltodextrin glucanotransferase activity Molecular Function GO:0046872 metal ion binding Molecular Function GO:2001070 starch binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.969

Rank 1 · TkA01G630960 · TK1151

Nucleus0.041

Rank 2 · TkA01G630960 · TK1151

Cytoplasm0.040

Rank 3 · TkA01G630960 · TK1151

Cell membrane0.030

Rank 4 · TkA01G630960 · TK1151

Mitochondrion0.025

Rank 5 · TkA01G630960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00686CBM_20104-190 aa

PF19340GCP6_N237-358 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G630960	`PF00686`	CBM_20	104	190	4.8e-17	62.2
TkA01G630960	`PF19340`	GCP6_N	237	358	0.32	10.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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