TkA01G550580 | RubberDandelionOmics

Gene overview

TkA01G550580

Reference: TK1151 Chr: Chr01 Coordinates: 138404202-138406096 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1333 bp · TkA01G550580|TK1151|cDNA

TAGAGAAAAACCGCTCCACTTTTAGTTCTTATATATCACTTGCATAGTTGCATACCGAACATGTTTTATTTCTTAAGAAAATTTATCGTGGTAGAAAAAATATGTGTAATAGTTTCTGAAAAAAAATCAAGAATTTAGATTTATGGATCATCAGAAAACCACCATCACCGGCACCACTATGGAAAACGCTAATCCGGCCGCCAAGAAAAACCTCTTAATCCTCCATTGCATCCTACTATCGATCGGAAACTGCGGCGGCC...

CDS

Download CDS FASTA

1089 bp · TkA01G550580|TK1151|CDS

ATGGATCATCAGAAAACCACCATCACCGGCACCACTATGGAAAACGCTAATCCGGCCGCCAAGAAAAACCTCTTAATCCTCCATTGCATCCTACTATCGATCGGAAACTGCGGCGGCCCATTAGTCATGCGCCTCTACTTTATCCATGGTGGCCAACGCATCTGGCTCATCGGATTCATCGAGACCGTCGGTTGGCCATTGATTTTTATCATCCTCATTATTCTCTACTTCAACCGCCGTTTCACCGGAAGAAACAACGG...

Protein

Download Protein FASTA

362 aa · TkA01G550580|TK1151|PROTEIN

MDHQKTTITGTTMENANPAAKKNLLILHCILLSIGNCGGPLVMRLYFIHGGQRIWLIGFIETVGWPLIFIILIILYFNRRFTGRNNGNNHPITFIYMRWRLFMVVALIGVLTGLDDYLYSYGIAHLPVSTYALINASRLVFMAVFAFILVKQKFTPYSINAVVLLTVGSAVLAFHSSGDRPKGESKGEYVMGFLMTVAAAALYGLVSPLVELTYKKTKQEITYTLVLEVQMVMCLFATVFCMVGMIFNDDFKAIPREAED...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G550580`
TK1151 ID	TkA01G550580
OH-1004 ID	LXL04_031139
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	96.400
Protein coverage (%)	TK1151 68.785 / OH-1004 31.579 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G550580

Location Chr01:138404202-138406096 (+)

Description Similar to PUP3: Purine permease 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28230`	Proton-coupled purine transporter mediating adenine and trans-zeatin uptake.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x Recycling of pyridoxine (vitamin B6) by PUP1 in Arabidopsis.2013 · DOI: 10.1111/tpj.12195
`At1g28220`	May be involved in transport of purine derivatives during pollen germination and tube elongation.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x
`At2g33750`	Mediates adenine transport.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x
`At4g18210`	Probable purine permease 10.	No verified direct reference in this release
`At4g18195`	Probable purine permease 8.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031139 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006863 purine nucleobase transport Biological Process

GO:0010184 cytokinin transport Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005345 purine nucleobase transmembrane transporter activity Molecular Function

GO:0015211 purine nucleoside transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G28220

ath:AT1G28230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.441

Rank 1 · TkA01G550580 · TK1151

Lysosome / Vacuole0.216

Rank 2 · TkA01G550580 · TK1151

Endoplasmic reticulum0.162

Rank 3 · TkA01G550580 · TK1151

Golgi apparatus0.120

Rank 4 · TkA01G550580 · TK1151

Cytoplasm0.117

Rank 5 · TkA01G550580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16913PUNUT24-347 aa

PF08449UAA54-338 aa

PF04478Mid256-77 aa

PF00892EamA57-172 aa

PF04142Nuc_sug_transp105-313 aa

PF00892EamA191-337 aa

PF04478Mid2296-318 aa

PF04142Nuc_sug_transp302-335 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G550580	`PF16913`	PUNUT	24	347	1.4e-102	344.0
TkA01G550580	`PF08449`	UAA	54	338	0.00012	22.1
TkA01G550580	`PF04478`	Mid2	56	77	1.9	9.0
TkA01G550580	`PF00892`	EamA	57	172	1.3e-09	39.1
TkA01G550580	`PF04142`	Nuc_sug_transp	105	313	1.8e-05	24.8
TkA01G550580	`PF00892`	EamA	191	337	1.3e-09	39.1
TkA01G550580	`PF04478`	Mid2	296	318	1.9	9.0
TkA01G550580	`PF04142`	Nuc_sug_transp	302	335	1.8e-05	24.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ96`	Arabidopsis thaliana	sp\|Q9FZ96\|PUP1_ARATH Purine permease 1	56.400%	Swiss-Prot	High
`Q9FZ95`	Arabidopsis thaliana	sp\|Q9FZ95\|PUP3_ARATH Purine permease 3	52.800%	Swiss-Prot	High
`Q94GB1`	Arabidopsis thaliana	sp\|Q94GB1\|PUP2_ARATH Purine permease 2	47.900%	Swiss-Prot	Medium
`O49725`	Arabidopsis thaliana	sp\|O49725\|PUP10_ARATH Probable purine permease 10	34.000%	Swiss-Prot	Medium
`Q0WRB9`	Arabidopsis thaliana	sp\|Q0WRB9\|PUP8_ARATH Probable purine permease 8	30.500%	Swiss-Prot	Medium

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