LXL04_038576 | RubberDandelionOmics

Gene overview

LXL04_038576

Reference: OH-1004 Chr: Chr09 Coordinates: 44274149-44275673 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

522 bp · LXL04_038576|LXL04_038576|OH1004|cDNA

ATGGGAGACGAGAAGGTGAAGAACGAGGTGATGGAGATCATGGGATTATTTCAAGTGTTGCCTCGTTTAGTCGTCTTCGATCTCGATTACACTCTTTGGCCTTTCTACTGTGAATGTCGATCCAAACGCGAGATGCCATCTATGTACCCCCATGCTAAAGGTATCTTATCTGCACTAAAGGAAAAAGGAGTCGACATGGCAATTGCCTCAAGATCACCAACAAGAGACATAGCAGAGACTTTTGTTGACAAATTGGGCAT...

CDS

Download CDS FASTA

522 bp · LXL04_038576|LXL04_038576|OH1004|CDS

ATGGGAGACGAGAAGGTGAAGAACGAGGTGATGGAGATCATGGGATTATTTCAAGTGTTGCCTCGTTTAGTCGTCTTCGATCTCGATTACACTCTTTGGCCTTTCTACTGTGAATGTCGATCCAAACGCGAGATGCCATCTATGTACCCCCATGCTAAAGGTATCTTATCTGCACTAAAGGAAAAAGGAGTCGACATGGCAATTGCCTCAAGATCACCAACAAGAGACATAGCAGAGACTTTTGTTGACAAATTGGGCAT...

Protein

Download Protein FASTA

173 aa · LXL04_038576|LXL04_038576|OH1004|PROTEIN

MGDEKVKNEVMEIMGLFQVLPRLVVFDLDYTLWPFYCECRSKREMPSMYPHAKGILSALKEKGVDMAIASRSPTRDIAETFVDKLGIKSMFVAQEIFSSWSHKTEHFKKIQQKTQVSYDKMLFFDDEDRNIDSVSKMGVTSILVNNGVTIGAFREGLTQFSKGPSSSKRDKKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038576`
TK1151 ID	TkA04G443110
OH-1004 ID	LXL04_038576
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_038576`
Location	Chr09:44274149-44275673 (-)
Description	Similar to MDP1: Magnesium-dependent phosphatase 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038576` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0030389 fructosamine metabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0003993 acid phosphatase activity Molecular Function GO:0004725 protein tyrosine phosphatase activity Molecular Function GO:0016791 phosphatase activity Molecular Function GO:0030946 protein tyrosine phosphatase activity, metal-dependent Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	hsa:145553 mmu:67881 sce:YER134C spo:2541375 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.764

Rank 1 · LXL04_038576 · OH-1004

Cytoplasm0.292

Rank 2 · LXL04_038576 · OH-1004

Cell membrane0.063

Rank 3 · LXL04_038576 · OH-1004

Endoplasmic reticulum0.043

Rank 4 · LXL04_038576 · OH-1004

Mitochondrion0.020

Rank 5 · LXL04_038576 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12689.14Acid_PPase20-40 aa

PF13419.13HAD_242-144 aa

PF12689.14Acid_PPase47-162 aa

PF00702.33Hydrolase47-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038576	`PF12689.14`	Acid_PPase	20	40	4.1e-37	128.4
LXL04_038576	`PF13419.13`	HAD_2	42	144	2.1e-10	41.6
LXL04_038576	`PF12689.14`	Acid_PPase	47	162	4.1e-37	128.4
LXL04_038576	`PF00702.33`	Hydrolase	47	133	1.4e-07	32.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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