LXL04_035782 | RubberDandelionOmics

基因概览

LXL04_035782

当前版本: OH-1004 染色体: Chr08 坐标: 28646256-28649536 链方向: - 类型: protein_coding

cDNA / CDS / 蛋白序列

可用序列下载 CDS FASTA 蛋白 FASTA cDNA FASTA

cDNA

2037 bp · LXL04_035782|LXL04_035782|OH1004|cDNA

ATGACAGGTGGGTGTAGTATCGTGTGGTTTAGAAGAGATCTGAGGGTAGAAGATAACCCTGCTTTAGCCGCCGGCGTACGATCAGGTAAAGTGATAGCAGTGTTCATATGGGCACCTGAAGAAGAAGGTCATTATTACCCGGGAAGGGTATCAAGATGGTGGCTTAAACAGAGCTTATCGTTACTCGATTCATCCTTAAAGAACCTCGGAACTTGTCTTATCACAAAACGATCTTCCGATAGTGTTTCGTCTCTTCTTGA...

CDS

下载 CDS FASTA

2037 bp · LXL04_035782|LXL04_035782|OH1004|CDS

ATGACAGGTGGGTGTAGTATCGTGTGGTTTAGAAGAGATCTGAGGGTAGAAGATAACCCTGCTTTAGCCGCCGGCGTACGATCAGGTAAAGTGATAGCAGTGTTCATATGGGCACCTGAAGAAGAAGGTCATTATTACCCGGGAAGGGTATCAAGATGGTGGCTTAAACAGAGCTTATCGTTACTCGATTCATCCTTAAAGAACCTCGGAACTTGTCTTATCACAAAACGATCTTCCGATAGTGTTTCGTCTCTTCTTGA...

蛋白

下载蛋白 FASTA

678 aa · LXL04_035782|LXL04_035782|OH1004|PROTEIN

MTGGCSIVWFRRDLRVEDNPALAAGVRSGKVIAVFIWAPEEEGHYYPGRVSRWWLKQSLSLLDSSLKNLGTCLITKRSSDSVSSLLDVIKSTGATQLFFNHLYDPISLVRDHRAKEILTENGIAVRSFNADLLYEPWEVLDDEGRPFNTFTGFWDRCLSMPYDPEAPQLPPKRIISGDVSKCPSDTLAFENESERGSNALLARAWTPGWSNANKALTAFINGPLHDYSINRRKADSATTSFLSPHLHFGEVSVRKVFHQA...

上下游序列下载

序列方向与下载说明

上游/下游最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

多版本 ID 对照

输入 ID	`LXL04_035782`
版本	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

查看完整 ID 对照表

SNP / Indel 变异与样本携带情况CRA009020 · OH-1004

展开后加载该基因的变异记录。

基因基本信息与功能注释

基因 ID LXL04_035782

位置 Chr08:28646256-28649536 (-)

描述 Similar to CRY1: Cryptochrome-1

拟南芥 / 水稻参考基因与文献

下载当前基因文献

拟南芥

参考基因 ID	可能功能	对应论文 / DOI
`At4g08920`	可能作为蓝光受体，调控下胚轴伸长、开花及其他光响应过程。	Arabidopsis Mutants Lacking Blue Light-Dependent Inhibition of Hypocotyl Elongation.1991 · DOI: 10.1105/tpc.3.7.685 Cryptochrome photoreceptors cry1 and cry2 antagonistically regulate primary root elongation in Arabidopsis thaliana.2006 · DOI: 10.1007/s00425-006-0280-6 CRY1 inhibits COP1-mediated degradation of BIT1, a MYB transcription factor, to activate blue light-dependent gene expression in Arabidopsis.2008 · DOI: 10.1111/j.1365-313x.2008.03508.x CRYPTOCHROME 1 is implicated in promoting R protein-mediated plant resistance to Pseudomonas syringae in Arabidopsis.2010 · DOI: 10.1093/mp/ssp107 Arabidopsis cryptochrome-1 restrains lateral roots growth by inhibiting auxin transport.2010 · DOI: 10.1016/j.jplph.2009.12.003 Light receptor action is critical for maintaining plant biomass at warm ambient temperatures.2011 · DOI: 10.1111/j.1365-313x.2010.04434.x Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades.2011 · DOI: 10.1111/j.1365-313x.2011.04598.x Light-activated cryptochrome reacts with molecular oxygen to form a flavin-superoxide radical pair consistent with magnetoreception.2011 · DOI: 10.1074/jbc.m111.228940 Arabidopsis cryptochrome 1 interacts with SPA1 to suppress COP1 activity in response to blue light.2011 · DOI: 10.1101/gad.2025011 The Cryptochrome Blue Light Receptors.2010 · DOI: 10.1199/tab.0135 Light-induced conformational changes in full-length Arabidopsis thaliana cryptochrome.2011 · DOI: 10.1016/j.jmb.2011.08.031 Phototropins but not cryptochromes mediate the blue light-specific promotion of stomatal conductance, while both enhance photosynthesis and transpiration under full sunlight.2012 · DOI: 10.1104/pp.111.187237 The shoot regeneration capacity of excised Arabidopsis cotyledons is established during the initial hours after injury and is modulated by a complex genetic network of light signalling.2013 · DOI: 10.1111/j.1365-3040.2012.02554.x The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis.2012 · DOI: 10.1105/tpc.112.100099 cry1 and GPA1 signaling genetically interact in hook opening and anthocyanin synthesis in Arabidopsis.2012 · DOI: 10.1007/s11103-012-9950-x Lifetimes of Arabidopsis cryptochrome signaling states in vivo.2013 · DOI: 10.1111/tpj.12144 Strigolactone-regulated hypocotyl elongation is dependent on cryptochrome and phytochrome signaling pathways in Arabidopsis.2014 · DOI: 10.1093/mp/sst093 Blue-light dependent reactive oxygen species formation by Arabidopsis cryptochrome may define a novel evolutionarily conserved signaling mechanism.2015 · DOI: 10.1111/nph.13341 Suppression of Arabidopsis flowering by near-null magnetic field is affected by light.2015 · DOI: 10.1002/bem.21927 Cellular metabolites modulate in vivo signaling of Arabidopsis cryptochrome-1.2015 · DOI: 10.1080/15592324.2015.1063758 Mutations throughout an Arabidopsis blue-light photoreceptor impair blue-light-responsive anthocyanin accumulation and inhibition of hypocotyl elongation.1995 · DOI: 10.1046/j.1365-313x.1995.08050653.x Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism.1998 · DOI: 10.1038/33701 Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development.1998 · DOI: 10.1104/pp.118.1.27
`At1g04400`	光感受器主要介导下胚轴伸长的蓝光抑制和花起始的光周期控制，并调节其他光反应，包括昼夜节律、热带生长、气孔开放、保卫细胞发育、根部发育、细菌和病毒病原体反应、非生物应激反应、细胞周期、程序性细胞死亡、顶端优势、果实和胚珠发育、种子休眠和磁感受。	The role of cryptochrome 2 in flowering in Arabidopsis.2003 · DOI: 10.1104/pp.103.029819 Cryptochrome photoreceptors cry1 and cry2 antagonistically regulate primary root elongation in Arabidopsis thaliana.2006 · DOI: 10.1007/s00425-006-0280-6 CRYPTOCHROME2 in vascular bundles regulates flowering in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048157 Double loss-of-function mutation in EARLY FLOWERING 3 and CRYPTOCHROME 2 genes delays flowering under continuous light but accelerates it under long days and short days: an important role for Arabidopsis CRY2 to accelerate flowering time in continuous light.2011 · DOI: 10.1093/jxb/erq450 Blue light-dependent interaction of CRY2 with SPA1 regulates COP1 activity and floral initiation in Arabidopsis.2011 · DOI: 10.1016/j.cub.2011.03.048 The Cryptochrome Blue Light Receptors.2010 · DOI: 10.1199/tab.0135 Phototropins but not cryptochromes mediate the blue light-specific promotion of stomatal conductance, while both enhance photosynthesis and transpiration under full sunlight.2012 · DOI: 10.1104/pp.111.187237 Lifetimes of Arabidopsis cryptochrome signaling states in vivo.2013 · DOI: 10.1111/tpj.12144 Strigolactone-regulated hypocotyl elongation is dependent on cryptochrome and phytochrome signaling pathways in Arabidopsis.2014 · DOI: 10.1093/mp/sst093 Multiple bHLH proteins form heterodimers to mediate CRY2-dependent regulation of flowering-time in Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003861 Cellular metabolites enhance the light sensitivity of Arabidopsis cryptochrome through alternate electron transfer pathways.2014 · DOI: 10.1105/tpc.114.129809 Suppression of Arabidopsis flowering by near-null magnetic field is affected by light.2015 · DOI: 10.1002/bem.21927 Blue-light dependent ROS formation by Arabidopsis cryptochrome-2 may contribute toward its signaling role.2015 · DOI: 10.1080/15592324.2015.1042647 Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2.1998 · DOI: 10.1073/pnas.95.5.2686 Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism.1998 · DOI: 10.1038/33701

水稻

当前来源表未检出该物种的同源命中。

功能注释来源

查看注释来源

功能注释来源：OH1004 · LXL04_035782 · GCA_047496595.1_OSU_TarKok_2.0。

GO 注释（OH1004 来源）

GO:0000719 photoreactive repair 生物过程

GO:0006281 DNA repair 生物过程

GO:0006325 chromatin organization 生物过程

GO:0006338 chromatin remodeling 生物过程

GO:0006952 defense response 生物过程

GO:0007623 circadian rhythm 生物过程

GO:0009266 response to temperature stimulus 生物过程

GO:0009414 response to water deprivation 生物过程

GO:0009416 response to light stimulus 生物过程

GO:0009583 detection of light stimulus 生物过程

GO:0009637 response to blue light 生物过程

GO:0009638 phototropism 生物过程

KEGG 基因交叉引用

ath:AT1G04400

ath:AT4G08920

atu:Atu1218

以下为同源蛋白关联的 KEGG 基因编号，不代表本基因已获得通路功能验证。

打开注释模块

基因表达

查看该基因在不同研究、组织与处理条件下的表达量。表达结果按研究与计量单位分别展示。

查看该基因的表达量

数据来源与对应关系说明

表达数据来自公开转录组研究；参考版本、样本信息和表达单位见查询结果。跨参考版本的对应关系不唯一时，不自动选择表达记录；缺失值不视为表达量为零。

亚细胞定位 Top 5

以下为计算预测或同源注释，不能替代定位实验。

细胞质0.389

排名 1 · LXL04_035782 · OH-1004

细胞核0.387

排名 2 · LXL04_035782 · OH-1004

细胞膜0.116

排名 3 · LXL04_035782 · OH-1004

质体0.104

排名 4 · LXL04_035782 · OH-1004

线粒体0.049

排名 5 · LXL04_035782 · OH-1004

LocPro · 直接预测 · 计算预测，非定位实验结果

进入亚细胞定位查询

预测功能结构域

结构域结果来自 Pfam-A/HMMER；位置为对应蛋白序列上的氨基酸坐标。

PF00875.25DNA_photolyase6-164 aa

PF03441.20FAD_binding_7282-480 aa

PF12546.14Cryptochrome_C510-625 aa

基因 ID	结构域编号	结构域名称	起始 aa	终止 aa	E 值	评分
LXL04_035782	`PF00875.25`	DNA_photolyase	6	164	3.3e-40	138.5
LXL04_035782	`PF03441.20`	FAD_binding_7	282	480	3.1e-67	226.6
LXL04_035782	`PF12546.14`	Cryptochrome_C	510	625	4.4e-19	70.0

拟南芥 / 水稻蛋白同源

仅展示拟南芥和水稻；Swiss-Prot 为人工审校条目，TrEMBL 为补充序列候选。同源相似性不等同于实验验证。

下载当前结果

蛋白	物种	描述	一致性	数据库	置信等级
`Q43125`	拟南芥	Cryptochrome-1	72.859%	Swiss-Prot	强数据库同源证据
`Q96524`	拟南芥	Cryptochrome-2	61.538%	Swiss-Prot	强数据库同源证据

JBrowse

在基因组浏览器中查看

基因详情