LXL04_034308 | RubberDandelionOmics

Gene overview

LXL04_034308

Reference: OH-1004 Chr: Chr07 Coordinates: 96083495-96086891 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1053 bp · LXL04_034308|LXL04_034308|OH1004|cDNA

atgGGTGTTATTGCAGTCGCAAATGCCCCTCTTCATGTTCTTGCAGTTGATGACAGCAATCTTGACAGGAAATTGATTGAACGTCTTCTAAAGACCTTCTCATATCATGTTACTGCTGTGGATTCTGGAAGTAAGGCCTTGGAGTTTTTGGGTCTGCAAGATGTTGAAAAGCTTCCATCCTTTTCTCCTACCGATTGTCAGCCAGAAGTGGAGGTGAATTTGATTATTACCGATTATTGTATGCCTGGGATGACTGGTTA...

CDS

Download CDS FASTA

1053 bp · LXL04_034308|LXL04_034308|OH1004|CDS

ATGGGTGTTATTGCAGTCGCAAATGCCCCTCTTCATGTTCTTGCAGTTGATGACAGCAATCTTGACAGGAAATTGATTGAACGTCTTCTAAAGACCTTCTCATATCATGTTACTGCTGTGGATTCTGGAAGTAAGGCCTTGGAGTTTTTGGGTCTGCAAGATGTTGAAAAGCTTCCATCCTTTTCTCCTACCGATTGTCAGCCAGAAGTGGAGGTGAATTTGATTATTACCGATTATTGTATGCCTGGGATGACTGGTTA...

Protein

Download Protein FASTA

350 aa · LXL04_034308|LXL04_034308|OH1004|PROTEIN

MGVIAVANAPLHVLAVDDSNLDRKLIERLLKTFSYHVTAVDSGSKALEFLGLQDVEKLPSFSPTDCQPEVEVNLIITDYCMPGMTGYELLRKIKESTSLKDIPVVIMSSENEPARINRCLEEGAEEFFLKPVRLSDVDKLKPYLSKNKRKTEDEEECVSNEKSRVKYDNVEALSEEERLKFSEDQSLLFRPHSNYGGRAQRRPAVELGFSRHFNFPAKSEIERGNLMVGMRQSRWQTIYVEIWREYKINATISFYIVADE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034308`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034308

Location Chr07:96083495-96086891 (-)

Description Similar to RR9: Two-component response regulator ORR9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g57040`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0143300`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	No verified direct reference in this release
`UniProt: Q4GZK2`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	No verified direct reference in this release
`Os12g0139400`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	No verified direct reference in this release
`UniProt: B8BLZ4`	Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034308 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000160 phosphorelay signal transduction system Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000156 phosphorelay response regulator activity Molecular Function

KEGG gene cross-reference

ath:AT3G57040

dosa:Os11g0143300

dosa:Os12g0139400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.750

Rank 1 · LXL04_034308 · OH-1004

Cytoplasm0.281

Rank 2 · LXL04_034308 · OH-1004

Cell membrane0.075

Rank 3 · LXL04_034308 · OH-1004

Endoplasmic reticulum0.041

Rank 4 · LXL04_034308 · OH-1004

Plastid0.022

Rank 5 · LXL04_034308 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00072.31Response_reg13-136 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034308	`PF00072.31`	Response_reg	13	136	1.3e-19	71.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80366`	Arabidopsis thaliana	Two-component response regulator ARR9	64.671%	Swiss-Prot	weak database homology
`Q2RAP3`	Oryza sativa subsp. japonica	Two-component response regulator ORR9	71.429%	Swiss-Prot	weak database homology
`Q4GZK2`	Oryza sativa subsp. indica	Two-component response regulator ORR9	71.429%	Swiss-Prot	weak database homology
`Q2QXY3`	Oryza sativa subsp. japonica	Two-component response regulator ORR10	71.429%	Swiss-Prot	weak database homology
`B8BLZ4`	Oryza sativa subsp. indica	Two-component response regulator ORR10	71.429%	Swiss-Prot	weak database homology

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