Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3405 bp · LXL04_034167|LXL04_034167|OH1004|cDNA
ATGGGTACATCGGCGTGCATAAAGGAAGTGGATAGATCGGCATTGGTGGCGTTTGCCCCCGATGCGCCCTTCCTTGCCGCCGGAACTATGGCTGGAGCCGTAGACATGTCGTTCAGTTCGTCTGCAAATCTTGAAATCCTCAACCTTGATTTCCGATCTGATGATCGTGACCTTCCGTTATCCGGTGCTATACCAAGTTCAGAACCGTTTAATCGGTTGTCTTGGGGGAAATCACCATCATCTGGTTCGGAAGAATTCTC...
3405 bp · LXL04_034167|LXL04_034167|OH1004|CDS
ATGGGTACATCGGCGTGCATAAAGGAAGTGGATAGATCGGCATTGGTGGCGTTTGCCCCCGATGCGCCCTTCCTTGCCGCCGGAACTATGGCTGGAGCCGTAGACATGTCGTTCAGTTCGTCTGCAAATCTTGAAATCCTCAACCTTGATTTCCGATCTGATGATCGTGACCTTCCGTTATCCGGTGCTATACCAAGTTCAGAACCGTTTAATCGGTTGTCTTGGGGGAAATCACCATCATCTGGTTCGGAAGAATTCTC...
Protein
Download Protein FASTA1134 aa · LXL04_034167|LXL04_034167|OH1004|PROTEIN
MGTSACIKEVDRSALVAFAPDAPFLAAGTMAGAVDMSFSSSANLEILNLDFRSDDRDLPLSGAIPSSEPFNRLSWGKSPSSGSEEFSLGLIAGGLVDGNIGVWNPSVLMRYATASDALLSQLLHDHTPPIPQNYSTICDTMFIFQWKSHYLFIFIDSSSEEGENALVQQLSRHKGPVRGLEFSSLSPNHLASGAEEGRICIWDLTKPTEPTHFPPLKGSESSTHGEIAYLSWNKKVQPILASTSFYGTTVVWDLRKQKPI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_034167 |
|---|---|
| TK1151 ID | TkA08G373600 |
| OH-1004 ID | LXL04_034167 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 90.100 |
| Protein coverage (%) | TK1151 97.001 / OH-1004 62.081Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_034167 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:86845263-86851341 (+) | |||||||||
| Description | Similar to SEC31B: Protein transport protein SEC31 homolog B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0007029 endoplasmic reticulum organization Biological Process GO:0015031 protein transport Biological Process GO:0051592 response to calcium ion Biological Process GO:0090110 COPII-coated vesicle cargo loading Biological Process GO:0005737 cytoplasm Cellular Component GO:0005768 endosome Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0009506 plasmodesma Cellular Component GO:0030120 vesicle coat Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G18830 ath:AT3G63460 gga:422597 mmu:69162 pon:100173999 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24105.2Beta-prop_CAF1B_HIR1160-279 aaPF25047.1Beta-prop_TEP1_2nd160-264 aaPF24807.2WD40_CDC20-Fz161-369 aaPF24807.2WD40_CDC20-Fz163-207 aaPF23381.2Beta-prop_IFT122_1st163-388 aaPF25175.2Beta-prop_WDR5165-260 aaPF25174.2Beta-prop_THOC3173-303 aaPF23414.2Beta-prop_EML_2188-355 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_034167 | PF24105.2 | Beta-prop_CAF1B_HIR1 | 160 | 279 | 2.9e-14 | 53.6 |
| LXL04_034167 | PF25047.1 | Beta-prop_TEP1_2nd | 160 | 264 | 8.1e-13 | 48.8 |
| LXL04_034167 | PF24807.2 | WD40_CDC20-Fz | 161 | 369 | 2.9e-22 | 80.0 |
| LXL04_034167 | PF24807.2 | WD40_CDC20-Fz | 163 | 207 | 2.9e-22 | 80.0 |
| LXL04_034167 | PF23381.2 | Beta-prop_IFT122_1st | 163 | 388 | 4.3e-17 | 63.1 |
| LXL04_034167 | PF25175.2 | Beta-prop_WDR5 | 165 | 260 | 6.7e-20 | 72.2 |
| LXL04_034167 | PF25174.2 | Beta-prop_THOC3 | 173 | 303 | 5.9e-20 | 72.1 |
| LXL04_034167 | PF23414.2 | Beta-prop_EML_2 | 188 | 355 | 2.1e-09 | 37.9 |
| LXL04_034167 | PF24814.2 | WD40_Prp19 | 222 | 353 | 2.4e-13 | 50.5 |
| LXL04_034167 | PF24817.2 | WD40_WDHD1_1st | 240 | 357 | 1e-10 | 42.0 |
| LXL04_034167 | PF25173.2 | Beta-prop_WDR3_1st | 248 | 389 | 9.2e-16 | 58.8 |
| LXL04_034167 | PF29037.1 | DSE1_N | 271 | 347 | 7.6e-10 | 39.1 |
| LXL04_034167 | PF25175.2 | Beta-prop_WDR5 | 283 | 389 | 6.7e-20 | 72.2 |
| LXL04_034167 | PF25174.2 | Beta-prop_THOC3 | 295 | 388 | 5.9e-20 | 72.1 |
| LXL04_034167 | PF25047.1 | Beta-prop_TEP1_2nd | 296 | 400 | 8.1e-13 | 48.8 |
| LXL04_034167 | PF24105.2 | Beta-prop_CAF1B_HIR1 | 304 | 389 | 2.9e-14 | 53.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.