Gene Card
Gene overview
cDNA / CDS / Protein Sequences
438 bp · LXL04_032815|LXL04_032815|OH1004|cDNA
ATGGGGATCCAGGGACGTTTGCCTCTAATGAAATCGGTTATGGTTCCTATCCACATAAAGGATCTCGAAGGTTATTCAGTTGACGTAGATACTTACTCTTGGCTCCATAAGGGAGCTCTTTCTTGCAGCATGGAGCTCTACAAATCCCAACCTACTTCCAAGTACACATCTTTCTTGTGTTCCCAATACATTGGGAAACAAATAACTCCATCAGGTTCATCCTTCACGACGTCTTCCTCTATTGCTTCAAGAATCGCTAA...
438 bp · LXL04_032815|LXL04_032815|OH1004|CDS
ATGGGGATCCAGGGACGTTTGCCTCTAATGAAATCGGTTATGGTTCCTATCCACATAAAGGATCTCGAAGGTTATTCAGTTGACGTAGATACTTACTCTTGGCTCCATAAGGGAGCTCTTTCTTGCAGCATGGAGCTCTACAAATCCCAACCTACTTCCAAGTACACATCTTTCTTGTGTTCCCAATACATTGGGAAACAAATAACTCCATCAGGTTCATCCTTCACGACGTCTTCCTCTATTGCTTCAAGAATCGCTAA...
Protein
Download Protein FASTA145 aa · LXL04_032815|LXL04_032815|OH1004|PROTEIN
MGIQGRLPLMKSVMVPIHIKDLEGYSVDVDTYSWLHKGALSCSMELYKSQPTSKYTSFLCSQYIGKQITPSGSSFTTSSSIASRIANLFLAGISSFYYALIKSSPFQSDSNSLDSFTINGVTEIQCLPLPSYAATPRTRLQQFPR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032815 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032815 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:29712134-29712763 (-) | ||||||||||||
| Description | Similar to EXO1: Exonuclease 1 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0002376 immune system process Biological Process GO:0006281 DNA repair Biological Process GO:0006298 mismatch repair Biological Process GO:0006310 DNA recombination Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0090656 t-circle formation Biological Process GO:0110025 DNA strand resection involved in replication fork processing Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0016604 nuclear body Cellular Component GO:0003677 DNA binding Molecular Function GO:0003682 chromatin binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G29630 dosa:Os01g0777300 hsa:9156 xla:399140 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00752.24XPG_N1-64 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032815 | PF00752.24 | XPG_N | 1 | 64 | 7.4e-07 | 30.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.