LXL04_032241 | RubberDandelionOmics

Gene overview

LXL04_032241

Reference: OH-1004 Chr: Chr07 Coordinates: 19119822-19121435 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1614 bp · LXL04_032241|LXL04_032241|OH1004|cDNA

ATGGAAAAGCAGCAGCTTCTGGAAATGGGTTTCTCCGACGAGTTAGTTTCTCAAGCTCTCTCCGCCACCGTCGGCAAACCCATTTCCAGTGCCACCGAATGGATTCTCAGCCAAGAATCTAAAACCGACAACAAAAAATCCCCAGTCCTCGATCAATCTCCTTCTCAGCCCAAAATCAATCCCTTCTTTCGTTTAAACTCCTCAAAGAAACCACGACAGTCGCCCGATAATCACCAAAAATCTGCAGCGGCGGTACCGAA...

CDS

Download CDS FASTA

1614 bp · LXL04_032241|LXL04_032241|OH1004|CDS

ATGGAAAAGCAGCAGCTTCTGGAAATGGGTTTCTCCGACGAGTTAGTTTCTCAAGCTCTCTCCGCCACCGTCGGCAAACCCATTTCCAGTGCCACCGAATGGATTCTCAGCCAAGAATCTAAAACCGACAACAAAAAATCCCCAGTCCTCGATCAATCTCCTTCTCAGCCCAAAATCAATCCCTTCTTTCGTTTAAACTCCTCAAAGAAACCACGACAGTCGCCCGATAATCACCAAAAATCTGCAGCGGCGGTACCGAA...

Protein

Download Protein FASTA

537 aa · LXL04_032241|LXL04_032241|OH1004|PROTEIN

MEKQQLLEMGFSDELVSQALSATVGKPISSATEWILSQESKTDNKKSPVLDQSPSQPKINPFFRLNSSKKPRQSPDNHQKSAAAVPKSSPQPEPKKRKQHPACNEQPLAERMRPHTISQIVGQDHLLADKSSILRSAIDRDRLPSLILWGPPGTGKTSIGRAIVNSCSSSSSYRFVTLSAVTAGVKDVRDVVDEARKRKKNSINGTITRTVLFVDEVHRFNKSQLDSFLPVIEDGSIIFIGATTENPSFHLITPLLSRCR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032241`
TK1151 ID	TkA08G160800
OH-1004 ID	LXL04_032241
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.100
Protein coverage (%)	TK1151 96.414 / OH-1004 98.138 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_032241`
Location	Chr07:19119822-19121435 (-)
Description	Similar to Wrnip1: ATPase WRNIP1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032241` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0000731 DNA synthesis involved in DNA repair Biological Process GO:0006261 DNA-templated DNA replication Biological Process GO:0030174 regulation of DNA-templated DNA replication initiation Biological Process GO:0045087 innate immune response Biological Process GO:0070914 UV-damage excision repair Biological Process GO:1902983 DNA strand elongation involved in mitotic DNA replication Biological Process GO:1903461 Okazaki fragment processing involved in mitotic DNA replication Biological Process GO:0000781 chromosome, telomeric region Cellular Component GO:0005634 nucleus Cellular Component GO:0016020 membrane Cellular Component GO:0048471 perinuclear region of cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference	hin:HI_1590 hsa:56897 mmu:78903 rno:282835 spo:2542096 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.779

Rank 1 · LXL04_032241 · OH-1004

Cytoplasm0.327

Rank 2 · LXL04_032241 · OH-1004

Mitochondrion0.063

Rank 3 · LXL04_032241 · OH-1004

Peroxisome0.015

Rank 4 · LXL04_032241 · OH-1004

Cell membrane0.014

Rank 5 · LXL04_032241 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22562.3UBA_74-39 aa

PF05496.19RuvB_N112-244 aa

PF00004.36AAA146-261 aa

PF07728.21AAA_5146-243 aa

PF16193.12AAA_assoc_2293-379 aa

PF12002.14MgsA_C380-529 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032241	`PF22562.3`	UBA_7	4	39	4.4e-07	30.4
LXL04_032241	`PF05496.19`	RuvB_N	112	244	1.3e-09	38.8
LXL04_032241	`PF00004.36`	AAA	146	261	2.2e-16	61.2
LXL04_032241	`PF07728.21`	AAA_5	146	243	9.9e-07	29.6
LXL04_032241	`PF16193.12`	AAA_assoc_2	293	379	4.4e-25	88.5
LXL04_032241	`PF12002.14`	MgsA_C	380	529	2.3e-54	184.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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