LXL04_031102 | RubberDandelionOmics

基因概览

LXL04_031102

当前版本: OH-1004 染色体: Chr07 坐标: 582122-593083 链方向: + 类型: protein_coding

cDNA / CDS / 蛋白序列

可用序列下载 CDS FASTA 蛋白 FASTA cDNA FASTA

cDNA

2673 bp · LXL04_031102|LXL04_031102|OH1004|cDNA

ATGCCGCATAGAACAACTTACATTTTCCCCAGGCAATTTCCAGAAAGTGGTGGATTCACTAATTCTCAATCAAAAGCTGAAGATCacgagaagaagaagatctcGAAAGAAACTTCAAGTTTCATGATCGATGGCGATGGAGATAGCCATAGGGTTACGAATAGAGATGTCTACGGACATACAGCTTTGCTATCCGGACGGCACCATTATAATAGCTGTAAAAGCGATCGGAGCCACGGGAAGAAGAACAAACAGCAGCT...

CDS

下载 CDS FASTA

2673 bp · LXL04_031102|LXL04_031102|OH1004|CDS

ATGCCGCATAGAACAACTTACATTTTCCCCAGGCAATTTCCAGAAAGTGGTGGATTCACTAATTCTCAATCAAAAGCTGAAGATCACGAGAAGAAGAAGATCTCGAAAGAAACTTCAAGTTTCATGATCGATGGCGATGGAGATAGCCATAGGGTTACGAATAGAGATGTCTACGGACATACAGCTTTGCTATCCGGACGGCACCATTATAATAGCTGTAAAAGCGATCGGAGCCACGGGAAGAAGAACAAACAGCAGCT...

蛋白

下载蛋白 FASTA

890 aa · LXL04_031102|LXL04_031102|OH1004|PROTEIN

MPHRTTYIFPRQFPESGGFTNSQSKAEDHEKKKISKETSSFMIDGDGDSHRVTNRDVYGHTALLSGRHHYNSCKSDRSHGKKNKQQLAAFINWLVEKKSSGGGSVPASGHVRLHNDDLNHFLPVPVKDVIDDDWHSHVSDVDFHHPTTQKSIGDRQVSLRRLSSDAASSYAASLFSGTIATSSSAAFYKDSVTEETIGMREEDVMVGINGDGGDDDRRSLVQRWRESYYLQLTLAKRLTHQATIGDEPTLIQGRRGGAGA...

上下游序列下载

序列方向与下载说明

上游/下游最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

多版本 ID 对照

输入 ID	`LXL04_031102`
版本	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

查看完整 ID 对照表

SNP / Indel 变异与样本携带情况CRA009020 · OH-1004

展开后加载该基因的变异记录。

基因基本信息与功能注释

基因 ID LXL04_031102

位置 Chr07:582122-593083 (+)

描述 Similar to CTR1: Serine/threonine-protein kinase CTR1

拟南芥 / 水稻参考基因与文献

下载当前基因文献

拟南芥

参考基因 ID	可能功能	对应论文 / DOI
`At5g03730`	在乙烯反应途径中充当负调节剂。	CTR1 phosphorylates the central regulator EIN2 to control ethylene hormone signaling from the ER membrane to the nucleus in Arabidopsis.2012 · DOI: 10.1073/pnas.1214848109 Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005143 CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases.1993 · DOI: 10.1016/0092-8674(93)90119-b
`At1g73660`	作为耐盐负调节剂。	The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis.2008 · DOI: 10.1007/s11103-008-9306-8 SIS8, a putative mitogen-activated protein kinase kinase kinase, regulates sugar-resistant seedling development in Arabidopsis.2014 · DOI: 10.1111/tpj.12404
`At1g08720`	参与调控MAP激酶级联的MAPKKK丝氨酸/苏氨酸蛋白激酶；该级联可能包括MPK3和MPK6，负向调控水杨酸（SA）依赖的防御应答、脱落酸（ABA）信号及乙烯诱导的衰老。	Negative regulation of defense responses in plants by a conserved MAPKK kinase.2001 · DOI: 10.1073/pnas.98.1.373 Overexpression of a kinase-deficient form of the EDR1 gene enhances powdery mildew resistance and ethylene-induced senescence in Arabidopsis.2002 · DOI: 10.1046/j.1365-313x.2002.01482.x Regulation of plant disease resistance, stress responses, cell death, and ethylene signaling in Arabidopsis by the EDR1 protein kinase.2005 · DOI: 10.1104/pp.105.060400 Costs and benefits of priming for defense in Arabidopsis.2006 · DOI: 10.1073/pnas.0510213103 Powdery mildew resistance conferred by loss of the ENHANCED DISEASE RESISTANCE1 protein kinase is suppressed by a missense mutation in KEEP ON GOING, a regulator of abscisic acid signaling.2008 · DOI: 10.1104/pp.108.127605 Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.108.062158 The KEEP ON GOING protein of Arabidopsis recruits the ENHANCED DISEASE RESISTANCE1 protein to trans-Golgi network/early endosome vesicles.2011 · DOI: 10.1104/pp.110.171785 Arabidopsis ENHANCED DISEASE RESISTANCE 1 is required for pathogen-induced expression of plant defensins in nonhost resistance, and acts through interference of MYC2-mediated repressor function.2011 · DOI: 10.1111/j.1365-313x.2011.04651.x Negative regulation of defence signalling pathways by the EDR1 protein kinase.2011 · DOI: 10.1111/j.1364-3703.2011.00708.x An Arabidopsis mutant with enhanced resistance to powdery mildew.1998 · DOI: 10.1105/tpc.10.6.947

水稻

当前来源表未检出该物种的同源命中。

功能注释来源

查看注释来源

功能注释来源：OH1004 · LXL04_031102 · GCA_047496595.1_OSU_TarKok_2.0。

GO 注释（OH1004 来源）

GO:0000165 MAPK cascade 生物过程

GO:0001666 response to hypoxia 生物过程

GO:0002229 defense response to oomycetes 生物过程

GO:0007165 signal transduction 生物过程

GO:0009414 response to water deprivation 生物过程

GO:0009617 response to bacterium 生物过程

GO:0009620 response to fungus 生物过程

GO:0009651 response to salt stress 生物过程

GO:0009686 gibberellin biosynthetic process 生物过程

GO:0009723 response to ethylene 生物过程

GO:0009738 abscisic acid-activated signaling pathway 生物过程

GO:0009744 response to sucrose 生物过程

KEGG 基因交叉引用

ath:AT1G08720

ath:AT1G73660

ath:AT5G03730

以下为同源蛋白关联的 KEGG 基因编号，不代表本基因已获得通路功能验证。

打开注释模块

基因表达

查看该基因在不同研究、组织与处理条件下的表达量。表达结果按研究与计量单位分别展示。

查看该基因的表达量

数据来源与对应关系说明

表达数据来自公开转录组研究；参考版本、样本信息和表达单位见查询结果。跨参考版本的对应关系不唯一时，不自动选择表达记录；缺失值不视为表达量为零。

亚细胞定位 Top 5

以下为计算预测或同源注释，不能替代定位实验。

细胞膜0.502

排名 1 · LXL04_031102 · OH-1004

细胞质0.346

排名 2 · LXL04_031102 · OH-1004

细胞核0.295

排名 3 · LXL04_031102 · OH-1004

内质网0.054

排名 4 · LXL04_031102 · OH-1004

高尔基体0.051

排名 5 · LXL04_031102 · OH-1004

LocPro · 直接预测 · 计算预测，非定位实验结果

进入亚细胞定位查询

预测功能结构域

结构域结果来自 Pfam-A/HMMER；位置为对应蛋白序列上的氨基酸坐标。

PF14381.13EDR1_CTR1_ARMC3_pept271-480 aa

PF07714.24PK_Tyr_Ser-Thr621-875 aa

PF00069.32Pkinase622-873 aa

基因 ID	结构域编号	结构域名称	起始 aa	终止 aa	E 值	评分
LXL04_031102	`PF14381.13`	EDR1_CTR1_ARMC3_pept	271	480	2.2e-70	237.3
LXL04_031102	`PF07714.24`	PK_Tyr_Ser-Thr	621	875	1.6e-64	218.4
LXL04_031102	`PF00069.32`	Pkinase	622	873	1.1e-53	183.1

拟南芥 / 水稻蛋白同源

仅展示拟南芥和水稻；Swiss-Prot 为人工审校条目，TrEMBL 为补充序列候选。同源相似性不等同于实验验证。

下载当前结果

蛋白	物种	描述	一致性	数据库	置信等级
`Q05609`	拟南芥	Serine/threonine-protein kinase CTR1	48.311%	Swiss-Prot	中等数据库同源证据
`Q9C9U5`	拟南芥	Probable serine/threonine-protein kinase SIS8	60.870%	Swiss-Prot	低置信数据库同源证据
`Q9FPR3`	拟南芥	Serine/threonine-protein kinase EDR1	62.121%	Swiss-Prot	低置信数据库同源证据

JBrowse

在基因组浏览器中查看

基因详情