LXL04_030500 | RubberDandelionOmics

Gene overview

LXL04_030500

Reference: OH-1004 Chr: Chr06 Coordinates: 117361224-117363041 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1169 bp · LXL04_030500|LXL04_030500|OH1004|cDNA

GCGATCAAGTAACAAGAAGATAAAAAATGTCTACCACTACTGACAAGGTGATTCGATGCAAAGCCGCGGTGGCTTGGGAAGCCGGAAAGCCTCTGGTGATCGAAGAAGTGGAGGTGGCGCCACCTCAGAAAATGGAAGTTCGAATCAAAATCCTCTTCACCTCTCTCTGCCACACCGATGTTTACTTCTGGGAAGCGAAAGGCCAGAATCCTGTATTTCCTCGAATTTTGGGGCATGAAGCTGGAGGGGTTGTGGAGAGT...

CDS

Download CDS FASTA

1143 bp · LXL04_030500|LXL04_030500|OH1004|CDS

ATGTCTACCACTACTGACAAGGTGATTCGATGCAAAGCCGCGGTGGCTTGGGAAGCCGGAAAGCCTCTGGTGATCGAAGAAGTGGAGGTGGCGCCACCTCAGAAAATGGAAGTTCGAATCAAAATCCTCTTCACCTCTCTCTGCCACACCGATGTTTACTTCTGGGAAGCGAAAGGCCAGAATCCTGTATTTCCTCGAATTTTGGGGCATGAAGCTGGAGGGGTTGTGGAGAGTGTAGGGGAAGGGGTGACGGATCTTCA...

Protein

Download Protein FASTA

380 aa · LXL04_030500|LXL04_030500|OH1004|PROTEIN

MSTTTDKVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRIKILFTSLCHTDVYFWEAKGQNPVFPRILGHEAGGVVESVGEGVTDLQPGDHVLPVFTGECKECAHCKSDESNMCDLLRINTDRGVMIHDQTSRFSINGKPIFHFVGTSTFSEYTVVHVGCLAKINPLAPLDKVCILSCGISTGLGATLNVAKPKKGSSVAIFGLGAVGLAAAEGARMAGASRIIGVDINANRFELARKFGVTEFVNPKDYEKPVQEVIAE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030500`
TK1151 ID	TkA07G408450
OH-1004 ID	LXL04_030500
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 90.789 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_030500`
Location	Chr06:117361224-117363041 (+)
Description	Similar to ADH2: Alcohol dehydrogenase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030500` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0046294 formaldehyde catabolic process Biological Process GO:0005829 cytosol Cellular Component GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity Molecular Function
KEGG gene cross-reference	mdm:103428551 sly:544074 sot:102577519 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.574

Rank 1 · LXL04_030500 · OH-1004

Nucleus0.209

Rank 2 · LXL04_030500 · OH-1004

Cell membrane0.178

Rank 3 · LXL04_030500 · OH-1004

Mitochondrion0.140

Rank 4 · LXL04_030500 · OH-1004

Endoplasmic reticulum0.075

Rank 5 · LXL04_030500 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08240.18ADH_N35-164 aa

PF16912.12Glu_dehyd_C197-364 aa

PF00107.33ADH_zinc_N206-338 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030500	`PF08240.18`	ADH_N	35	164	1.3e-20	74.3
LXL04_030500	`PF16912.12`	Glu_dehyd_C	197	364	2.3e-07	31.2
LXL04_030500	`PF00107.33`	ADH_zinc_N	206	338	3.8e-29	102.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card