LXL04_029439 | RubberDandelionOmics

Gene overview

LXL04_029439

Reference: OH-1004 Chr: Chr06 Coordinates: 90700297-90704607 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1317 bp · LXL04_029439|LXL04_029439|OH1004|cDNA

ATGGGGGTGAAGTACGGAGCCAAACAGACTCATACCCACAAGCTCGGGTCCGGCGGCGTCTCCGCCAGATGGGTTGCAATCTTGTGCATTGTTAGTTTCTGTTTCGGTGTCATCTTCTTCAACAGGTTCGGCATCAGTTCAGAACCAGATGAAGTCTCATCACCTTTGGACACGGACAAACAAAAACAATTAATCGATCCTCTTACAGACTGCGACAACAAGGCAAATAATCAAAATATAATTTCAAGGGAAAGTGACTT...

CDS

Download CDS FASTA

1317 bp · LXL04_029439|LXL04_029439|OH1004|CDS

ATGGGGGTGAAGTACGGAGCCAAACAGACTCATACCCACAAGCTCGGGTCCGGCGGCGTCTCCGCCAGATGGGTTGCAATCTTGTGCATTGTTAGTTTCTGTTTCGGTGTCATCTTCTTCAACAGGTTCGGCATCAGTTCAGAACCAGATGAAGTCTCATCACCTTTGGACACGGACAAACAAAAACAATTAATCGATCCTCTTACAGACTGCGACAACAAGGCAAATAATCAAAATATAATTTCAAGGGAAAGTGACTT...

Protein

Download Protein FASTA

438 aa · LXL04_029439|LXL04_029439|OH1004|PROTEIN

MGVKYGAKQTHTHKLGSGGVSARWVAILCIVSFCFGVIFFNRFGISSEPDEVSSPLDTDKQKQLIDPLTDCDNKANNQNIISRESDLIGILQLKGKIFSPKFHTHVMSSCNFLFYTYYIKKVKKTTMFKSIKKLKTFRTLDKTISSLETQLAETRSAKRPETSNDHGKFFFVMGIMTAFSSRKRRESIRETWMPQGKDLLRLEKEKGIIIRFVIGHSATSGGLLDDAIDVEDKQHKDFLRLNHVEGYHELSSKTQIYFST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029439`
TK1151 ID	TkA07G317310
OH-1004 ID	LXL04_029439
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	84.400
Protein coverage (%)	TK1151 87.595 / OH-1004 88.813 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029439

Location Chr06:90700297-90704607 (+)

Description Similar to GALT31A: Beta-1,6-galactosyltransferase GALT31A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32930`	Beta-galactosyltransferase involved in elongation of beta-1,6-linked galactan side chains on arabinogalactan proteins.	A galactosyltransferase acting on arabinogalactan protein glycans is essential for embryo development in Arabidopsis.2013 · DOI: 10.1111/tpj.12281 Galactosyltransferases from Arabidopsis thaliana in the biosynthesis of type II arabinogalactan: molecular interaction enhances enzyme activity.2014 · DOI: 10.1186/1471-2229-14-90
`At1g05170`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.	No verified direct reference in this release
`At1g77810`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.	Identification of a novel group of putative Arabidopsis thaliana beta-(1,3)-galactosyltransferases.2008 · DOI: 10.1007/s11103-008-9351-3
`At2g32430`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.	No verified direct reference in this release
`At4g26940`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029439 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0008378 galactosyltransferase activity Molecular Function

GO:0048531 beta-1,3-galactosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G05170

ath:AT1G32930

ath:AT1G77810

ath:AT2G32430

ath:AT4G26940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.758

Rank 1 · LXL04_029439 · OH-1004

Endoplasmic reticulum0.108

Rank 2 · LXL04_029439 · OH-1004

Cytoplasm0.072

Rank 3 · LXL04_029439 · OH-1004

Cell membrane0.072

Rank 4 · LXL04_029439 · OH-1004

Extracellular0.065

Rank 5 · LXL04_029439 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13334.12DUF409421-81 aa

PF01762.28Galactosyl_T183-380 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029439	`PF13334.12`	DUF4094	21	81	1.1e-14	55.3
LXL04_029439	`PF01762.28`	Galactosyl_T	183	380	1.1e-47	163.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9MAP8`	Arabidopsis thaliana	Beta-1,6-galactosyltransferase GALT31A	59.413%	Swiss-Prot	strong database homology
`A8MRC7`	Arabidopsis thaliana	Probable beta-1,3-galactosyltransferase 2	54.500%	Swiss-Prot	strong database homology
`Q6NQB7`	Arabidopsis thaliana	Beta-1,3-galactosyltransferase 7	54.950%	Swiss-Prot	strong database homology
`Q9ZV71`	Arabidopsis thaliana	Probable beta-1,3-galactosyltransferase 3	53.133%	Swiss-Prot	strong database homology
`Q8LEJ9`	Arabidopsis thaliana	Probable beta-1,3-galactosyltransferase 4	51.500%	Swiss-Prot	strong database homology

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