LXL04_029127 | RubberDandelionOmics

Gene overview

LXL04_029127

Reference: OH-1004 Chr: Chr06 Coordinates: 81413355-81414910 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

747 bp · LXL04_029127|LXL04_029127|OH1004|cDNA

ATGGCTTCTTCTCCTTCCTTCTCGGTGGTTTCGTTTTCATCTGTTAACACTGAACCATCTGTTAGTCGACTCTCAAGTCGACAAAATCTAGTGTCACTAAACCCTAGACAACAACGCCTTGGAATTAATCATCGTCGAAATCGCAATACTAGACTCATCAGTGCTTCCGTGTCATCCCCGGCACAAGAGATATCATCGTCAGCATCGCAGCGCCGGCCTGATGAACTTGCAGCCTCCATCTTTTCTAAGGTTATACAAAC...

CDS

Download CDS FASTA

747 bp · LXL04_029127|LXL04_029127|OH1004|CDS

ATGGCTTCTTCTCCTTCCTTCTCGGTGGTTTCGTTTTCATCTGTTAACACTGAACCATCTGTTAGTCGACTCTCAAGTCGACAAAATCTAGTGTCACTAAACCCTAGACAACAACGCCTTGGAATTAATCATCGTCGAAATCGCAATACTAGACTCATCAGTGCTTCCGTGTCATCCCCGGCACAAGAGATATCATCGTCAGCATCGCAGCGCCGGCCTGATGAACTTGCAGCCTCCATCTTTTCTAAGGTTATACAAAC...

Protein

Download Protein FASTA

248 aa · LXL04_029127|LXL04_029127|OH1004|PROTEIN

MASSPSFSVVSFSSVNTEPSVSRLSSRQNLVSLNPRQQRLGINHRRNRNTRLISASVSSPAQEISSSASQRRPDELAASIFSKVIQTDRGVTLTREQHLQVAELAGELSKYCVDAPVKCPLIFGDWDVVYCSNPTSPGGGFRSGLGRLVFKTNEMIQVVEAPDTVRNKVSFSALGFLDGEVSLKGKLIVLDEKWIKVVFEPPELKIGSLGFQFGGESEVQLEITYIDEKLRLGMGSRGSLFVFQRRSQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029127`
TK1151 ID	TkA07G275160
OH-1004 ID	LXL04_029127
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.451 / OH-1004 72.984 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029127

Location Chr06:81413355-81414910 (-)

Description Similar to PAP8: Probable plastid-lipid-associated protein 8, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19940`	Probable plastid-lipid-associated protein 8, chloroplastic.	No verified direct reference in this release
`At3g26070`	Probable plastid-lipid-associated protein 4, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029127 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0010287 plastoglobule Cellular Component

KEGG gene cross-reference

ath:AT3G26070

ath:AT5G19940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.990

Rank 1 · LXL04_029127 · OH-1004

Mitochondrion0.020

Rank 2 · LXL04_029127 · OH-1004

Cytoplasm0.016

Rank 3 · LXL04_029127 · OH-1004

Nucleus0.015

Rank 4 · LXL04_029127 · OH-1004

Peroxisome0.012

Rank 5 · LXL04_029127 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04755.19PAP_fibrillin78-204 aa

PF04755.19PAP_fibrillin216-243 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029127	`PF04755.19`	PAP_fibrillin	78	204	1.9e-15	58.1
LXL04_029127	`PF04755.19`	PAP_fibrillin	216	243	1.9e-15	58.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q941D3`	Arabidopsis thaliana	Probable plastid-lipid-associated protein 8, chloroplastic	57.438%	Swiss-Prot	strong database homology
`Q9LU85`	Arabidopsis thaliana	Probable plastid-lipid-associated protein 4, chloroplastic	19.712%	Swiss-Prot	weak database homology

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