LXL04_029126 | RubberDandelionOmics

Gene overview

LXL04_029126

Reference: OH-1004 Chr: Chr06 Coordinates: 81401602-81410277 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7617 bp · LXL04_029126|LXL04_029126|OH1004|cDNA

ATGGACAAAAATAAAAACAGGACCGATCTGCTCGCTGCTGGTCGTAAAAAGCTTCAACAATACcagaaaaagaaagatggtaAAGGCAGTAAATCCTCCCGTAAGGCCAATAAAACTGACCATGGTGATTCATCTTCTGCTTCCCAACCGCCACCTGTACAAGATACAGACACTGAGCTTGTTGAATTATCTTCACAAGCTCCCATGGATACCTCTGTAGCTACTAATGCTGATGTGGCAACTCCTGATCCTTCCTCAAC...

CDS

Download CDS FASTA

7617 bp · LXL04_029126|LXL04_029126|OH1004|CDS

ATGGACAAAAATAAAAACAGGACCGATCTGCTCGCTGCTGGTCGTAAAAAGCTTCAACAATACCAGAAAAAGAAAGATGGTAAAGGCAGTAAATCCTCCCGTAAGGCCAATAAAACTGACCATGGTGATTCATCTTCTGCTTCCCAACCGCCACCTGTACAAGATACAGACACTGAGCTTGTTGAATTATCTTCACAAGCTCCCATGGATACCTCTGTAGCTACTAATGCTGATGTGGCAACTCCTGATCCTTCCTCAAC...

Protein

Download Protein FASTA

2538 aa · LXL04_029126|LXL04_029126|OH1004|PROTEIN

MDKNKNRTDLLAAGRKKLQQYQKKKDGKGSKSSRKANKTDHGDSSSASQPPPVQDTDTELVELSSQAPMDTSVATNADVATPDPSSTSVVPIEVSKVDESVSDSVPNEDLQSSNLDNVTPTVSPPRTIHVEGKLENAFSAGLKAVLDDGTDHKAGEIIAAHGEDQEDDHSDNRSSLIDVEEDSKRENRSSEIEQSSEERDGFSAFTNADVASASGLPPSGIGDSGDANAAIHSASSLPLSSDHESGMDDSGGTNVDEHAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029126`
TK1151 ID	TkA07G275150
OH-1004 ID	LXL04_029126
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029126

Location Chr06:81401602-81410277 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g24460`	Tethering factor involved in vesicle fusion at the trans- Golgi network (TGN) thus being required for efficient protein trafficking to the vacuole.	TNO1 is involved in salt tolerance and vacuolar trafficking in Arabidopsis.2011 · DOI: 10.1104/pp.110.168963 TNO1, a TGN-localized SNARE-interacting protein, modulates root skewing in Arabidopsis thaliana.2017 · DOI: 10.1186/s12870-017-1024-4

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029126 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006623 protein targeting to vacuole Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0006906 vesicle fusion Biological Process

GO:0007034 vacuolar transport Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010015 root morphogenesis Biological Process

GO:0010031 circumnutation Biological Process

GO:0010053 root epidermal cell differentiation Biological Process

GO:0010226 response to lithium ion Biological Process

GO:0010555 response to mannitol Biological Process

GO:0022604 regulation of cell morphogenesis Biological Process

GO:0035864 response to potassium ion Biological Process

KEGG gene cross-reference

ath:AT1G24460

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.419

Rank 1 · LXL04_029126 · OH-1004

Cytoplasm0.403

Rank 2 · LXL04_029126 · OH-1004

Endoplasmic reticulum0.166

Rank 3 · LXL04_029126 · OH-1004

Nucleus0.129

Rank 4 · LXL04_029126 · OH-1004

Cell membrane0.090

Rank 5 · LXL04_029126 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4I9A2`	Arabidopsis thaliana	Trans-Golgi network-localized SYP41-interacting protein 1	26.515%	Swiss-Prot	weak database homology

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