Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1416 bp · LXL04_028401|LXL04_028401|OH1004|cDNA
ATGAGTTCCCGATTCCCATCCCACCAACTCACCAATGGACTATACGTATCCGGGCGGCCGGAGCCGCCAAAAGAAAAACCACCGCCAATGTCCTCCACCGCGGTCCCCTACACCGGCGGCGACATAAAAAAGTCCGGCGAACTCGGAAAGATGTTCGATGTCGACCACAATAACTCTCGGCCAAGAAAATCCGGCCATCTAACCAACCCCCCAATAAGAACCGGATCCATGAGCAATGGAACCACAACCAGAATGAGTTC...
1416 bp · LXL04_028401|LXL04_028401|OH1004|CDS
ATGAGTTCCCGATTCCCATCCCACCAACTCACCAATGGACTATACGTATCCGGGCGGCCGGAGCCGCCAAAAGAAAAACCACCGCCAATGTCCTCCACCGCGGTCCCCTACACCGGCGGCGACATAAAAAAGTCCGGCGAACTCGGAAAGATGTTCGATGTCGACCACAATAACTCTCGGCCAAGAAAATCCGGCCATCTAACCAACCCCCCAATAAGAACCGGATCCATGAGCAATGGAACCACAACCAGAATGAGTTC...
Protein
Download Protein FASTA471 aa · LXL04_028401|LXL04_028401|OH1004|PROTEIN
MSSRFPSHQLTNGLYVSGRPEPPKEKPPPMSSTAVPYTGGDIKKSGELGKMFDVDHNNSRPRKSGHLTNPPIRTGSMSNGTTTRMSSLSGNNPGTTSLKKTSSGPLNKHGEPIRKSSGPQGLTGLTSASRQNSGPLPPVLPATGLLTSGPILSGPLNSSGGPRKSSGPLDGSGSIKSRSTSMVKNQAVTHLSQDDGHSFFRSFPKLVFWSIVLLFVMGFIAAVFILAAVGNPILLVVVVVLFGTVSLGFAWNACFGRKAV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028401 |
|---|---|
| TK1151 ID | TkA07G151870 |
| OH-1004 ID | LXL04_028401 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028401 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:40499768-40502154 (+) | |||||||||
| Description | Similar to At1g16860: Uncharacterized membrane protein At1g16860 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0045920 negative regulation of exocytosis Biological Process GO:1905750 negative regulation of endosome to plasma membrane protein transport Biological Process GO:2001007 negative regulation of cellulose biosynthetic process Biological Process GO:0005886 plasma membrane Cellular Component GO:0008233 peptidase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G16860 ath:AT1G78880 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.