LXL04_028286 | RubberDandelionOmics

Gene overview

LXL04_028286

Reference: OH-1004 Chr: Chr06 Coordinates: 36828783-36833012 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1239 bp · LXL04_028286|LXL04_028286|OH1004|cDNA

ATGGGTTTGATGACGAGAGTTTTCTTCTTGATCGCCATGGTTGCATGTTTCACCTCAGTTGCTCACGCCATTGCAGGCCAAGCAACTTTCTATACTCCTCCCTATGTTCCATCCGCATGTTTCGGCTTTGAAGACCGCGGTAATATGATTCTAGCAGCAAACGGCGGTTTGTATGCCAACGGAGGTGCATGTGGGACCAGGTACCGTGTGACTTGCACCAGTGGAACCAACGCCGGTGTTCCTCAGCCATGCACAGGCAA...

CDS

Download CDS FASTA

1239 bp · LXL04_028286|LXL04_028286|OH1004|CDS

ATGGGTTTGATGACGAGAGTTTTCTTCTTGATCGCCATGGTTGCATGTTTCACCTCAGTTGCTCACGCCATTGCAGGCCAAGCAACTTTCTATACTCCTCCCTATGTTCCATCCGCATGTTTCGGCTTTGAAGACCGCGGTAATATGATTCTAGCAGCAAACGGCGGTTTGTATGCCAACGGAGGTGCATGTGGGACCAGGTACCGTGTGACTTGCACCAGTGGAACCAACGCCGGTGTTCCTCAGCCATGCACAGGCAA...

Protein

Download Protein FASTA

412 aa · LXL04_028286|LXL04_028286|OH1004|PROTEIN

MGLMTRVFFLIAMVACFTSVAHAIAGQATFYTPPYVPSACFGFEDRGNMILAANGGLYANGGACGTRYRVTCTSGTNAGVPQPCTGNSVDVTVVDRCPGCAANQVDLSQEAFAVIANTDAGRINIEYNQRNMNFISGIKIPTHNNTVRGQGIVNQSSLSHQHPYFDIDSVMVDPEKVRLRAAFETMLANSYKGQKNKANDHFIRSGGYVDIERARNTAPSNITPENWRKVVDFFTGEAHKTISQRNKNNRALQTIKNRGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028286`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028286

Location Chr06:36828783-36833012 (+)

Description Similar to CjBAp12: EG45-like domain containing protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30380`	Might have a systemic role in water and solute homeostasis.	No verified direct reference in this release
`At2g18660`	Plays a systemic role in water and solute homeostasis.	Expansin-like molecules: novel functions derived from common domains.2002 · DOI: 10.1007/s00239-001-0055-4 AtPNP-A is a systemically mobile natriuretic peptide immunoanalogue with a role in Arabidopsis thaliana cell volume regulation.2004 · DOI: 10.1016/s0014-5793(03)01384-x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0552000`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os05g0246300`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028286 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0009828 plant-type cell wall loosening Biological Process

GO:0010230 alternative respiration Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0016020 membrane Cellular Component

GO:0048046 apoplast Cellular Component

GO:0051428 peptide hormone receptor binding Molecular Function

KEGG gene cross-reference

ath:AT2G18660

dosa:Os04g0552000

dosa:Os05g0246300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.725

Rank 1 · LXL04_028286 · OH-1004

Cytoplasm0.351

Rank 2 · LXL04_028286 · OH-1004

Extracellular0.074

Rank 3 · LXL04_028286 · OH-1004

Endoplasmic reticulum0.033

Rank 4 · LXL04_028286 · OH-1004

Cell membrane0.033

Rank 5 · LXL04_028286 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03330.25DPBB_155-127 aa

PF03004.20Transposase_24224-340 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028286	`PF03330.25`	DPBB_1	55	127	2.6e-16	60.3
LXL04_028286	`PF03004.20`	Transposase_24	224	340	6.6e-13	49.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0C2`	Arabidopsis thaliana	Putative EG45-like domain containing protein 1	49.587%	Swiss-Prot	weak database homology
`Q9ZV52`	Arabidopsis thaliana	EG45-like domain containing protein 2	42.149%	Swiss-Prot	weak database homology
`Q7XT40`	Oryza sativa subsp. japonica	Expansin-B15	37.500%	Swiss-Prot	weak database homology
`Q5W6Z9`	Oryza sativa subsp. japonica	Expansin-B18	37.755%	Swiss-Prot	weak database homology

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