LXL04_027387 | RubberDandelionOmics

Gene overview

LXL04_027387

Reference: OH-1004 Chr: Chr06 Coordinates: 14692407-14693719 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1153 bp · LXL04_027387|LXL04_027387|OH1004|cDNA

ATGGAAACAGTTTTGGAGGAAGGACAAAACAAACCTAAACGGCAAAAAATTCAAGAAATCGCGGATGAGGGGGAAGAAGATCGAATCAGTGCGTTACCAGATTGCTTGCTTCTTGAAATCCTCGACCGCTTACCCTACACAAACCAGGCCATTAAAACAGGTTCACTCTCCAAACGATGGAAACATGTTTGGACTTCCGTTCCTTCTCTCATTTTCCATCAATATATGCACCGGCTGTCCGATTTCTTCTCAGACATCGA...

CDS

Download CDS FASTA

1074 bp · LXL04_027387|LXL04_027387|OH1004|CDS

ATGGAAACAGTTTTGGAGGAAGGACAAAACAAACCTAAACGGCAAAAAATTCAAGAAATCGCGGATGAGGGGGAAGAAGATCGAATCAGTGCGTTACCAGATTGCTTGCTTCTTGAAATCCTCGACCGCTTACCCTACACAAACCAGGCCATTAAAACAGGTTCACTCTCCAAACGATGGAAACATGTTTGGACTTCCGTTCCTTCTCTCATTTTCCATCAATATATGCACCGGCTGTCCGATTTCTTCTCAGACATCGA...

Protein

Download Protein FASTA

357 aa · LXL04_027387|LXL04_027387|OH1004|PROTEIN

METVLEEGQNKPKRQKIQEIADEGEEDRISALPDCLLLEILDRLPYTNQAIKTGSLSKRWKHVWTSVPSLIFHQYMHRLSDFFSDIDKTLTQCRQSKVKRFIIYTIHDNRYESQVNSWISYAIRCEVEELTILLSTVIASELVLDQNFFINSCFTSLKLAGCVLNPTGAITWKNLRSLCISDGEFNEDLIENILSGSPQLETLILDSYYGCRRLNITSNSVKNLEFTGDMVPGDESDEEDTIEINAPNILSLTIQCELLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027387`
TK1151 ID	TkA07G054650
OH-1004 ID	LXL04_027387
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027387

Location Chr06:14692407-14693719 (+)

Description Similar to At3g18150: Putative F-box/LRR-repeat protein At3g18150

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18150`	Putative F-box/LRR-repeat protein At3g18150.	No verified direct reference in this release
`At5g03100`	F-box protein At5g03100.	No verified direct reference in this release
`At3g28410`	Putative F-box/LRR-repeat protein At3g28410.	No verified direct reference in this release
`At3g03360`	F-box/LRR-repeat protein At3g03360.	No verified direct reference in this release
`At5g02700`	Putative F-box/LRR-repeat protein At5g02700.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027387 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT3G18150

ath:AT3G28410

ath:AT5G02700

ath:AT5G03100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.901

Rank 1 · LXL04_027387 · OH-1004

Cytoplasm0.157

Rank 2 · LXL04_027387 · OH-1004

Cell membrane0.030

Rank 3 · LXL04_027387 · OH-1004

Endoplasmic reticulum0.030

Rank 4 · LXL04_027387 · OH-1004

Plastid0.016

Rank 5 · LXL04_027387 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box29-70 aa

PF23622.2LRR_At1g61320_AtMIF199-271 aa

PF24758.2LRR_At5g56370116-259 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027387	`PF00646.39`	F-box	29	70	4.1e-07	30.4
LXL04_027387	`PF23622.2`	LRR_At1g61320_AtMIF1	99	271	4.4e-12	46.8
LXL04_027387	`PF24758.2`	LRR_At5g56370	116	259	6.9e-12	46.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LV26`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g18150	34.062%	Swiss-Prot	moderate database homology
`Q501G5`	Arabidopsis thaliana	F-box protein At5g03100	32.500%	Swiss-Prot	moderate database homology
`Q9LSJ3`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At3g28410	30.061%	Swiss-Prot	moderate database homology
`Q84W80`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g03360	30.556%	Swiss-Prot	moderate database homology
`Q9LZ15`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At5g02700	29.358%	Swiss-Prot	weak database homology

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