LXL04_025197 | RubberDandelionOmics

Gene overview

LXL04_025197

Reference: OH-1004 Chr: Chr05 Coordinates: 107432011-107434844 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1362 bp · LXL04_025197|LXL04_025197|OH1004|cDNA

ATGGGCAACTGTTTGAATTCTTCTTCCGCGAAAGTGGACGCCACTCTTAGCTCCCGAACCTCTGGGATCTCAAAAGTGGGCAGCAAAATCAGTTCGTCTTCAGGTCTTTCCAGTATCACCATTTCGACTTTCAGTGGGGGTAGCAATATTGATAGTGTTTACACCCCAAGATCCGAAGGTGAAATATTATCGTCTCCCAATTTGAAACCCTTCTCCTTCATGGAGCTAAAGAACGCCACAAGGAACTTCCGAGTCGACAG...

CDS

Download CDS FASTA

1362 bp · LXL04_025197|LXL04_025197|OH1004|CDS

ATGGGCAACTGTTTGAATTCTTCTTCCGCGAAAGTGGACGCCACTCTTAGCTCCCGAACCTCTGGGATCTCAAAAGTGGGCAGCAAAATCAGTTCGTCTTCAGGTCTTTCCAGTATCACCATTTCGACTTTCAGTGGGGGTAGCAATATTGATAGTGTTTACACCCCAAGATCCGAAGGTGAAATATTATCGTCTCCCAATTTGAAACCCTTCTCCTTCATGGAGCTAAAGAACGCCACAAGGAACTTCCGAGTCGACAG...

Protein

Download Protein FASTA

453 aa · LXL04_025197|LXL04_025197|OH1004|PROTEIN

MGNCLNSSSAKVDATLSSRTSGISKVGSKISSSSGLSSITISTFSGGSNIDSVYTPRSEGEILSSPNLKPFSFMELKNATRNFRVDSLLGEGGFGYVFKGWIDEFTHIASKPGSGTVIAVKKLKPEGFQGHKEWLTEVTYLGQLHHPNLVKLIGYCSEGDNRLLVYEFMPKGSLENHLFRSTPTPFFLNTYQFIFILPPLIVFFRFTGGPQPLPWATRLKVAIGAARGLAFLHDAKDQVIYRDFKASNILLDAEFNAKLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025197`
TK1151 ID	TkA06G075810
OH-1004 ID	LXL04_025197
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.900
Protein coverage (%)	TK1151 100.000 / OH-1004 96.247 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025197

Location Chr05:107432011-107434844 (+)

Description Similar to PBL3: Probable serine/threonine-protein kinase PBL3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02800`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g14370`	Involved in disease resistance signaling.	Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.2010 · DOI: 10.1016/j.chom.2010.03.007 xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants.2015 · DOI: 10.1016/j.chom.2015.08.004 Ligand-triggered allosteric ADP release primes a plant NLR complex.2019 · DOI: 10.1126/science.aav5868
`At1g26970`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g69790`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g07570`	Possible bi-functional kinase.	Novel protein kinase of Arabidopsis thaliana (APK1) that phosphorylates tyrosine, serine and threonine.1992 · DOI: 10.1007/bf00046450

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025197 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004713 protein tyrosine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G07570

ath:AT1G14370

ath:AT1G26970

ath:AT1G69790

ath:AT2G02800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.674

Rank 1 · LXL04_025197 · OH-1004

Nucleus0.231

Rank 2 · LXL04_025197 · OH-1004

Cytoplasm0.228

Rank 3 · LXL04_025197 · OH-1004

Endoplasmic reticulum0.040

Rank 4 · LXL04_025197 · OH-1004

Golgi apparatus0.029

Rank 5 · LXL04_025197 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase84-388 aa

PF07714.24PK_Tyr_Ser-Thr85-390 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025197	`PF00069.32`	Pkinase	84	388	7.5e-42	144.3
LXL04_025197	`PF07714.24`	PK_Tyr_Ser-Thr	85	390	2.5e-47	162.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O49840`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL3	65.471%	Swiss-Prot	strong database homology
`O49839`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL2	62.108%	Swiss-Prot	strong database homology
`Q5PP29`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL4	61.785%	Swiss-Prot	strong database homology
`Q5XF79`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL18	62.228%	Swiss-Prot	strong database homology
`Q06548`	Arabidopsis thaliana	Probable serine/threonine-protein kinase PBL9	58.987%	Swiss-Prot	strong database homology

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